barSeed - Barley Seed Development Database

Probe CUST_22997_PI390587928

Source Contig U35_15863

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22997_PI390587928	Hv_44K_v2	GGTTGATTTGGAACCACACTATTTTCTTATATCCTCCTTGACTTCAATAGTACATGCAAT	2077	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.280	1.146	1.049	1.061	0.521	0.585
Raw	1847.013	2544.844	2083.470	3266.150	569.542	697.053

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367922	3194	2e-24	3064 - 3123	100	60 / 60	plus	ABC07764 ABC07765
MLOC	MLOC_19195.1	1506	2e-24	88 - 147	100	60 / 60	minus	ABC07765
MLOC	MLOC_19195.2	3240	2e-24	88 - 147	100	60 / 60	minus	ABC07764 ABC07765
JLOC1	JLOC1_13317.2	3225	8e-25	3083 - 3142	100	60 / 60	plus
Harvest21	ABC07765	2165	3e-25	2077 - 2136	100	60 / 60	plus	ABC07765
Harvest35	U35_15863	2186	3e-25	2078 - 2137	100	60 / 60	plus

Contig Sequence (2186 bp)

>U35_15863 2186 Hv_44K_v2
CCCTTTCTTTGTTTCTGGAGTATGTCTTCGGAACAAAGCAGAAATGGTCATACTCGAGGC
TGCACGAGCAATAACTGATCTAAATGGTGTTACCAGCCGTGAGCTTACACCTGCAATCAC
GGTGCTGCAATTGTTCTTAAGTTCATCCAAACCTGTGCTTAGATTTGCCGCTGTTCGCAC
ACTTAACAAGGTTGCATCAACTCATCCTTTGGCCGTTACGAATTGTAACATAGATATGGA
GAGTTTAATCTCTGATCAGAACAGGAGCATCGCAACCCTTGCAATTACCACACTGCTCAA
GACAGGCAATGAATCAAGTGTTGATCGTTTAATGAAACAGATGACCAACTTTATGTCAGA
CATTGCCGATGAATTCAAGATTGTTGTCGTAGAAGCAATAAGATCCTTGTGCTTGAAGTT
CCCCCTCAAATATCGCTCACTGATGAACTTTTTGAGCAATATCCTACGTGAAGAGGGTGG
GTTTGACTACAAAAAAGCTATAGTTGATTCAATTATCATACTCATTAGAGATATTCCTGA
TGCTAAAGAAAGCGGTTTATTTCACTTATGTGAATTCATCGAGGACTGTGAATTCACATA
TCTGTCCACTCAGATCCTTCACTTTCTGGGAAATGAAGGGCCAAAGACATCAGATCCTAG
TAAATACATACGCTATATATACAATAGGGTGATACTTGAAAATGCCACTGTTCGAGCTAG
TGCAGTAAGTACATTGGCAAAGTTTGGTGCTTTGGTTGATGCACTCAAGCCTCGCATATT
TGTCCTTTTGAGGCGTTGCCTGTTTGACGGTGATGATGAGGTGCGTGACAGAGCGACACT
TTACATCAAATTGCTTGATGGGGAAGCTACTGTTGGTGAGACTGAGAAGGATGTGACTGA
CTTTCTCTTTGGTTCACTCGATGTTCCACTAGCTAACTTGGAGGCCAGCCTGCGGAATTA
TGAACCATCAGAGGTACCTTTTGATATTTCATCTGTACCCAAGGAAACAAAATCACAACC
CCTTGCTGAGAAAAAGGCCACAGGCAAGAAATCAACAGGACCATCATCTACTGTCAATGG
CCCTGTTCCTACCATTGATGCATCCTATGAGAAGCTTCTTTCAGCCATTCCTGAGTTTGC
TGGTTTTGGAAAACTCTTTAAGTCATCAACACCTGTTGAATTGACTGAAGCCGAGACCGA
ATATTCAGTCAATGTCGTGAAGCACATTTATGATGGGCATGTTGTCCTTCAGTACAACTG
TACAAACACAATACCTGAACAACTGCTTGAAGAGGTCATGGTGTTTGTTGATGCTTCCGA
GGCAGAAGAATTTTCAGAAGTTGCATCGAAGCCTTTAAGATCCTTACCTTATGATTCCCC
TGGACAGACCTTTGTGGCCTTTGAAAAGCCAGAAGGTGTCCTTGCCACTGGGAAGTTCTC
AAATATATTGAAATTCATTGTTAAAGAGGTTGATTCGTCCACAGGTGAAGCTGAGGATGA
CGGTGTTGAGGATGAGTATCAGCTAGAAGATTTTGAAATTATTTCTGCTGATTACATGTT
GAAGGTGGGGGTTTCGAACTTCCGAAATGCTTGGGAAAGCATGGATCCAGAAAGTGAGCG
GGTCGATGAGTATGGACTTGGTGTTAGGGAGAACTTGGCTGAGGCTGTGAGTGCTGTTAT
AAGCATCCTTGGCATGCAGCCTTGCGAGGGAACCGATGTTGTCCAAAACAATTCGAGATC
GCACACTTGCCTGCTTTCAGGTGTGTTCATCGGTAATGTGAAAGTTTTGGTGAGACTATC
ATTTGGAATCAGCGGGCCGAAAGAAGTGGCCATGAAGCTAGCTGTCAGATCAGATGATCC
GGAGGTCAGTGACAGGATCCATGAAATTGTTGCAAATGGCTAAAACTACCAGCAAGAGTT
TTTTGGTTGACCTTTTTGTTGTTTTGGCTTTCCATCTGGTGAAAGCACAAGGGATTTCGA
TTAATTATAGTATATGGCTATGTGTAAGTTGGTTTTCTCGTTGGAATCCCACTGTTGTTG
CAGCATCATTCTTGTTCAACGCAGTAAAACAATTTTTGGTTGATTTGGAACCACACTATT
TTCTTATATCCTCCTTGACTTCAATAGTACATGCAATAATACTGAAAAAAAAAAAAAAAA
TCAATTTTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15863 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g10150.1	890	protein\|coatomer subunit gamma-2, putative, expressed
Brachypodium v1_2	Bradi1g54510.1	889
Arabidopsis v10	AT4G34450.1	886	coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative \| chr4:16471956-16476795 FORWARD LENGTH=886