barSeed - Barley Seed Development Database

Probe CUST_22996_PI390587928

Source Contig U35_15864

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22996_PI390587928	Hv_44K_v2	GGACTCGTGTTTGGCTTATAATCTAGTATTTTCTGAACACTGCAATAGAACTACTTCTGT	962	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.153	1.303	1.177	0.907	0.295	0.300
Raw	7126.463	12535.840	9884.450	12060.690	1363.106	1509.537

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39723.1	1123	2e-24	825 - 884	100	60 / 60	plus	ABC04257 ABC29361
JLOC1	JLOC1_25916.1	983	8e-25	825 - 884	100	60 / 60	plus
Harvest21	ABC04257	1043	3e-25	956 - 1015	100	60 / 60	plus	ABC04257
Harvest35	U35_15864	1050	3e-25	963 - 1022	100	60 / 60	plus

Contig Sequence (1050 bp)

>U35_15864 1050 Hv_44K_v2
TGCCATTCCAAAACCTCTCAAAACCCTCGTCTCGTCCGTCCCCCCTCCGCCGCCGCCGCC
GCCGCCGGTGCCTAGCAAGATGAGTCGGCACCCTGAAGTCAGATGGGCTCAAAGGATTGA
CAAGGTTTATATCACAGTACAATTGCCTGACGCAAAGGATGCCAAGGTCAACCTGGAACC
TGATGGTGTATTCTCTTTCTTTGCCACTGCTGGAACTGATGGGAACTCATATGAATCGAA
ACTGGATTTGAATGACAAAGTGAACGTCGAGGCAAGCAAAGTAAGTGTTGGTGTCAGGTC
TATATTCTGTATTTTGGAAAAAGCCGAGGCCAAATGGTGGAATAAGCTTGTTCGAGATGA
TCAGAAGGCACCACACTTCGTGAAAGTTGATTGGGACAAATGGGTTGATGAAGATGATGA
TGGTGCTGATGTTAATGTTGATGGGATGGACTTTTCGAATATGGGTGGCATGGGTGGTAT
GCCTGGAATGGAAGGTTTGGGCGGCATGGGCGGTATGCCCGGCATGGAAGGTTTGGGTGG
CATGGGTGGTTTGGCTGGTATGATGGGCGGAATGGGCGGTATGGGCATGCCGCCTGGTAT
GGAAGGTTTGGGTGCTATGGGGATGGATGAGTTTGAGGATGAGAGTGACGACGAAGGGGA
AGTGTCAAAACCTCAAGACGCAGGGAAGGCTGATGCCGCCCAAATCTCCCAGGAGGTGGA
AGGCAAAGCTGGCCCACCAGCTCAGAGCAACTGAAAGCATTCCACTCAATAATCCCTACT
CGATTGTATCCTAGCATTTTTTTATGAACGTGCTGAACTGAAGACACATTCTGCTCGCTG
GTTGGGGTTGGTGTCTCGTGTAAGTTGTTGACTTAATACTTGTTTCCAACTATGCATCGT
ACCGTCTGTTGGCATATTATGAGTTGTGAGATTGTTTGCATTGTAAAAAAAAAAAAAATT
CTGGACTCGTGTTTGGCTTATAATCTAGTATTTTCTGAACACTGCAATAGAACTACTTCT
GTCATTATTTCTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15864 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g27070.1	214	5e-57	protein\|co-chaperone protein SBA1, putative, expressed
Brachypodium v1_2	Bradi3g21990.2	234	2e-58
Arabidopsis v10	None