barSeed - Barley Seed Development Database

Probe CUST_22995_PI390587928

Source Contig U35_15865

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22995_PI390587928	Hv_44K_v2	GTGTCTCGTGTAAGTTGTTGACTTAATACTTGTTTCCAACTATGCATCGTACCGTCTGTT	740	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361772	496	2e-24	354 - 413	100	60 / 60	plus	ABC04257 ABC29361
MLOC	MLOC_39723.1	1123	2e-24	717 - 776	100	60 / 60	plus	ABC04257 ABC29361
JLOC1	JLOC1_25916.1	983	8e-25	717 - 776	100	60 / 60	plus
Harvest21	ABC52376	638	3e-25	493 - 552	100	60 / 60	plus
Harvest21	ABC31186	494	3e-25	429 - 488	100	60 / 60	plus
Harvest21	ABC04257	1043	3e-25	844 - 903	100	60 / 60	plus	ABC04257
Harvest21	ABC29361	258	1e-23	152 - 211	98	59 / 60	plus	ABC29361
Harvest35	U35_50294	638	3e-25	493 - 552	100	60 / 60	plus
Harvest35	U35_31044	494	3e-25	429 - 488	100	60 / 60	plus
Harvest35	U35_15865	825	3e-25	741 - 800	100	60 / 60	plus
Harvest35	U35_15864	1050	3e-25	851 - 910	100	60 / 60	plus

Contig Sequence (825 bp)

>U35_15865 825 Hv_44K_v2
ATAGCGGGTGGCGAGCGTGCGTTAATGGGCTGTAACCCGGCTACGCCCGCCCAGACATAG
TCCACCCGGCCTGCTACTTGCTCGTCCTTACCCTATTACGGTGCCGCACCCTATTCTCAC
TTCTCTTCTCACTTCGCACCCTGCCATACCAAAACCTCTCAAAACCCTCGTCTCGTCCGT
CCCCCCTCCGCCGCCGCCGCCGCCGCCGGTGCCTAGCAAGATGAGTCGGCACCCTGAAGT
CAGATGGGCTCAAAGGATTGACAAGGTTTATATCACAGTACAATTGCCTGACGCAAAGGA
TGCCAAGGTCAACCTGGAACCTGATGGTGTATTCTCTTTCTTTGCCACTGCTGGAACTGA
TGGGAACTCATATGAATCGAAACTGGATTTGAATGACAAAGTGAACGTCGAGGCAAGCAA
AGTAAGTGTTGGTGTCAGGTCTATATTCTGTATTTTGGAAAAAGCCGAGGCCAAATGGTG
GAATAAGCTTGTTCGAGATGATCAGAAGGCACCACACTTCGTGAAAGTTGATTGGGACAA
ATGGGTTGATGAAGATGATGATGGTGCTGATGTTAATGTTGATGGGATGGACTTTTCGAA
TATGGGTGGAAGGCAAAGCTGGCCCACCAGCTCAGAGCAACTGAAAGCATTCCACTCAAT
AATCCCTACTCGATTGTATCCTAGCATTTTTTTATGAACGTGCTGAACTGAAGACACATT
CTGCTCGCTGGTTGGGGTTGGTGTCTCGTGTAAGTTGTTGACTTAATACTTGTTTCCAAC
TATGCATCGTACCGTCTGTTGGCATATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15865 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g27070.1	214	1e-58	protein\|co-chaperone protein SBA1, putative, expressed
Brachypodium v1_2	Bradi3g21990.2	234	4e-61
Arabidopsis v10	None