barSeed - Barley Seed Development Database

Probe CUST_22992_PI390587928

Source Contig U35_15869

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22992_PI390587928	Hv_44K_v2	GATCTAAGATCTGTATAGGATCTTCCTTTACTCATGCATGCATGTTACTAGGAATCAAAA	2605	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.544	1.260	1.051	0.910	0.484	0.553
Raw	2126.263	2673.030	2012.163	2710.273	506.040	633.629

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363539	3139	7e-23	2993 - 3049	100	57 / 57	plus	ABC04040 ABC44575
MLOC	MLOC_63357.1	2879	7e-23	2750 - 2806	100	57 / 57	plus	ABC04040 ABC44575
MLOC	MLOC_63357.7	2694	7e-23	2586 - 2642	100	57 / 57	plus	ABC04040 ABC44575
MLOC	MLOC_63357.5	3053	7e-23	2942 - 2998	100	57 / 57	plus	ABC04040 ABC44575
MLOC	MLOC_63357.6	2938	7e-23	2803 - 2859	100	57 / 57	plus	ABC04040 ABC44575
MLOC	MLOC_63357.2	2601	7e-23	2472 - 2528	100	57 / 57	plus	ABC04040 ABC44575
JLOC1	JLOC1_41486.9	2687	4e-23	2546 - 2602	100	57 / 57	plus
JLOC1	JLOC1_41486.8	2671	4e-23	2530 - 2586	100	57 / 57	plus
JLOC1	JLOC1_41486.7	2653	4e-23	2512 - 2568	100	57 / 57	plus
JLOC1	JLOC1_41486.6	2487	4e-23	2346 - 2402	100	57 / 57	plus
JLOC1	JLOC1_41486.5	2747	4e-23	2606 - 2662	100	57 / 57	plus
JLOC1	JLOC1_41486.4	2685	4e-23	2544 - 2600	100	57 / 57	plus
JLOC1	JLOC1_41486.3	2684	4e-23	2543 - 2599	100	57 / 57	plus
JLOC1	JLOC1_41486.2	2708	4e-23	2567 - 2623	100	57 / 57	plus
JLOC1	JLOC1_41486.1	2440	4e-23	2299 - 2355	100	57 / 57	plus
Harvest21	ABC04040	2723	1e-23	2606 - 2662	100	57 / 57	plus	ABC04040
Harvest35	U35_15869	2726	3e-25	2606 - 2665	100	60 / 60	plus

Contig Sequence (2726 bp)

>U35_15869 2726 Hv_44K_v2
CGCCACCGAACCGGTGCTCGCGGGCGCGCGGGGATGGAGAACCCCGACGCGCAAGCGGGA
GCCGACGCGGGGCTCCCCCCGCCCCCGCCGCCGCCCTTGGACGCCGGCCTGGGCAGCGAC
CCGGCCGAGGTCCTCCCCCCGCCGCCCCCGCTCCTCCCGGGCGTAGCCCCGTACGACGCC
GCACAGGGAGCCGGCGGATCCGCGCACCCCGCCGAACACGCCGCGCTGAACGGCACCTCC
GGCGAGACGGCGGGCTACCAGGCCGCGGAGAACGGCGGCGCCGCCGACCCCATGGTCCCC
GAGCAGGCGTACGAGGATGCCATGGCTTCGGCGGAAGAGGCCAGGTTGTGGGGTGTCGTC
ACCGCCGACTGCTTGGACTTCGATGCTTGGACCGCGCTCATCGAGGAGACCGAGAGGATC
GCCGAGAGCAACATAGTGAAGATACGCAAAGTGTATGATGCATTTCTTGCCGAGTTCCCT
CTGTGCTTTGGCTATTGGAAGAAATATGCTGATCATGAAGGCCGCCTTGACGGTGTCAAT
AAAGTTTTTGAGGTTTATGAACGGGCAGTTCTTGCAGTTACTTATTCAGTGGACATATGG
TGTAATTATTGCCAGTTTGCGATTTCAACATACAACGACCCAGATGTCATCAGAAGGCTG
TTTGATCGGGGTTTGGCATATGTTGGAACAGATTATCGTTCCAATACTTTGTGGGATGAG
TACATCAAGTATGAAGAATCACTTCAAGCATGGAATCATCTAGCTGCGGTATACACAAGA
ATTTTAGAGCACCCTATACAGCAGCTTGATCGGTACTTTAATTGCTTGAAGGAGTTGACT
GCAACACGGAGCCTGTCAGAAATACTTACTGCTGAGGAAACTTCCATGTATTGTCTTACT
GTTGAGAATAGTGCTCCGGTCATTGACGGGGAGGCACATCCTAATGATGTAGAAAAAACT
GCAGAGCCTGAAGTTTCATCTTCAACCGAAGCAGAGGACAAGGCAAAGTATGTTTCCATT
AGAGAAGAGTTGTATAAGAAGGCCAAAGAGTATGAATCTAAGATTATTAGTTTTGAGCAA
GCTATTAGAAGACCATACTTTCATGTCAAGCCTCTTGATAAACCAGAGCTTGAAAATTGG
CACAGCTATCTTGATTTTATCGAGAGGGAAGAAGACATTAATAAGGTTATCAAGTTATAC
GAAAGATGTGTTATTGCGTGTGCTAGCTATTCAGAATTCTGGATCCGCTATGTGCAATGC
ATGGAGGATAGACAAAGCCTAGAACTAGCGAACAATGCTCTTGCTCGTGCAACTCACGTG
TTTGTCAAGAAGCAGACAGAGATCCATCTGTTCAATGCAAGATTCAAAGAGCTTAATGGT
GATACTGATGGAGCACGTGCAGAATATCAACATCTCCACTCATTGTTATATCCTGGCCTA
CTTGAAGCCATTGTGAAGCATGCTAATATGGAGCACCGGCTGGGAGATAAGGAATCTGCT
TGTTTAGTTTATGAGAAAGCCATTGCTGCCGAAAAGGAAAAGGAGCAGAGCCAGTTTTTA
CCAATGCTACTGATTCAGTACTCACGTTTCTTATATATGATCTGTGACTTGGAAAAGGCA
AGGGAGGTCTCAGGTGGATTACACGGGCTAGTTAACATGACTAAACCAGTTCTTGAGGCT
GTCATCTTTCTCGAGTCGATCTTTCAATCTGAGAAGCGAATTGATTTGTTAGAATCACTG
GTGGAGAAGTTTCTTACAACTGAGCAGACTCAAGGGGAGCTGGCAAGCTTAAACGACAAA
GAGGAATTATCTTCCATATATTTAGAGTTTTTGGATACCTTTGGGGATATACAGTTGATC
AAGAAGGCTACAACTCGACATACTATTCTATTTTCACGTAAAAGGAGCATTCTGCCATCA
AAGAAACGAAGAGCCGATGATGCTGTTATGTCTGGTAGAGATAAAATGGCTAAAACCGGA
GATGGCACCCAACCAGTCATGGGAACTGATCCAAATGCTCATAATCCTGCAGTTTGGCCT
GCGACTTCTGAAGCATCAGCGCAGCAATGGGGGGCTGCTTACGCACAACAGGCTGCTTAT
CCTGCATATGGAGCTTACGACTACAGCCAGCAAATGCCCCAATCTGCTCCTCAAGCAGCC
GCTTATGGTGCCTATCCTCCCACATACCCTGCCCAGGCCTACCCGCAGCAGAGCTACGCA
CAACCTGCAGCGATGCCCGTGGCAGCACCAGTGCCCACCCCAGCACAGGCGCCGGCACCT
GCAGCAGCTTACCCTCAGCAACCTGCTGTGGCTGCCGCCCCCCAAGCTTACTATGGCAGC
GCCGCCACGTACTACTGATTTCTAGATTGGTGTTGTCAACGCATGGGCATGTGTACCTAC
GCAGCTGCCTTCCATCGCGAAAGGCATCCACATAGCTTGTAAACCCCTGTGTTATCGTTT
GCATTGGCAGGCAGGTTTTTTGGCAGCAGCAGGCCAAAGAAGGAAGACCTGGATTGCGAG
ACCCTTTTTTGTTTGTCCGGTCGAGGTGTAACTAGAGTATTCGGTCAGATGCTATTTGCA
GCAGCTGCAGTTGTAATGCGTCCCAGATCTAAGATCTGTATAGGATCTTCCTTTACTCAT
GCATGCATGTTACTAGGAATCAAAAAAAAAAAAGTTTCTAGGAATCTTCCATATAATGTT
TTGAAATTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_15869 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g11200.1	790	protein\|pre-mRNA-processing factor 39, putative, expressed
Brachypodium v1_2	Bradi1g70450.1	725
Arabidopsis v10	AT1G04080.3	823	\| Symbols: PRP39 \| Tetratricopeptide repeat (TPR)-like superfamily protein \| chr1:1051803-1056550 FORWARD LENGTH=823