barSeed - Barley Seed Development Database

Probe CUST_22991_PI390587928

Source Contig U35_27840

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22991_PI390587928	Hv_44K_v2	AAAGTACAGAAGGTCAAAGGTTAATGAGGGTGTTTTTGGTTCTGATCCTCCTCGGGCAGA	506	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52203.4	4278	2e-24	304 - 363	100	60 / 60	plus	None
MLOC	MLOC_52203.2	5269	2e-24	429 - 488	100	60 / 60	plus	ABC09656
MLOC	MLOC_52203.5	4692	2e-24	177 - 236	100	60 / 60	plus	ABC09656
MLOC	MLOC_52203.3	2620	2e-24	333 - 392	100	60 / 60	plus	None
MLOC	MLOC_52203.1	5501	2e-24	661 - 720	100	60 / 60	plus	ABC09656
JLOC1	JLOC1_33421.3	5311	8e-25	271 - 330	100	60 / 60	plus
JLOC1	JLOC1_33421.2	5286	8e-25	321 - 380	100	60 / 60	plus
JLOC1	JLOC1_33421.1	5596	8e-25	631 - 690	100	60 / 60	plus
Harvest21	ABC22775	580	3e-25	507 - 566	100	60 / 60	plus
Harvest35	U35_27840	581	3e-25	507 - 566	100	60 / 60	plus

Contig Sequence (581 bp)

>U35_27840 581 Hv_44K_v2
CAGCCCCCCTCCTCCCGTCCACAAACCCTAACCCTAATCTCGCCGACTCCCCCGCCGTTG
CGGCCCGCCCCCACCGCCATCCTCGCCGCTCCCCGCGCTCGCCTTGGTTCCCACTCCACC
CCCGGAGCGTCCCTACACACGCGCGCGCGCGGGGGCGCCAGCTAGGGTTTCGCTATGGAC
CCGCGCCGCCCTTCCCCGCGCGGCGTCGCCAACGGCAGCGGCTTCTCCTACTCCAATCTC
TTCAACCTCGAGCCATTGCTAAACTTTAAGGTCCCTTTACCGGAAGATCTTGATCGCTAT
GGGAATAGTAGCCCAAATGGGAGCGTGAGTAGCCAAGGTCAAGAGTCCTTGTCGGATCAG
TACAATGGTGTGAGTGATGCTTCTCATGGGCTGCATCGAAAGCGAAAAAGGCATCTTGGT
GTTGCGAGCGATGATGAGGAAGCAGATGCCCACAGTAACCAAATAACTGAGGAGTACTAC
CGTACAATGCTGAGTGAACATGTTCAAAAGTACAGAAGGTCAAAGGTTAATGAGGGTGTT
TTTGGTTCTGATCCTCCTCGGGCAGACACCCCCCAAATGAT

Homology of Contig U35_27840 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g22900.1	1458	2e-63	protein\|SNF2 family N-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi1g62320.1	1495	3e-63
Arabidopsis v10	None