barSeed - Barley Seed Development Database

Probe CUST_2297_PI390587928

Source Contig U35_11452

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2297_PI390587928	Hv_44K_v2	GCCTTGTTTTAAGTATCCAAATTCTGTTTAGTGCTGGACCAAAAAATTTTGCCATGCACC	520	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_48885.1	490	7e-23	328 - 387	98	59 / 60	plus	ABC37331
JLOC1	JLOC1_31343.1	465	4e-23	325 - 384	98	59 / 60	plus
Harvest35	U35_11452	583	3e-25	521 - 580	100	60 / 60	plus

Contig Sequence (583 bp)

>U35_11452 583 Hv_44K_v2
GGTATAGATCTCTCGCGAACTCCTTCCAAGTTGATACCATTGCTTACCACTTGTCAGTGC
TGAGGGACATGTTTCCTAATGGTATCAATGTGCTGTCCTTGTCCACCGGAATTGGAGGAG
GAGCTGTAGCTTTGCACAGGCTTGGGATCCGCATGAGGACGGTGGTGTCTGTTGAGAAAG
GTGAAACTAATCGGAGGATTTTTAATGGTTGGTGGGGTCAGACCCAGACAGGCAAGCTGG
TTGAGATTGCTGACATGAAATCTCTCACTAATGATAGAATTGCATCGTTAGTTGGTAGAT
ATGGTGGCTTCGACTTGGTTATTGGGGGCAGCCCAAGTGAGCAATCTGCTTTGTTATATG
ACTACCCCAGAATCTTGGATGCCATCAAGTCGGCTATGGCAAGGATGTAGGCTAAGCATC
GTAGTACCTATTCTGTCACTTAGTGCTAATCTCTAGGAACCGCAGCTTCATCTATGTTTA
AACATTGAGGTGACGTGGTGGATGTTTATTTGCAAGAAATGCCTTGTTTTAAGTATCCAA
ATTCTGTTTAGTGCTGGACCAAAAAATTTTGCCATGCACCGCA

Homology of Contig U35_11452 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g02010.4	508	3e-54	protein\|DNA methyltransferase protein, putative, expressed
Brachypodium v1_2	Bradi4g05680.1	589	6e-57
Arabidopsis v10	None