barSeed - Barley Seed Development Database

Probe CUST_22944_PI390587928

Source Contig U35_15882

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22944_PI390587928	Hv_44K_v2	TTCAGATTCACGTCCTCGTCGACTACTACGGCGGCAAGAAGCTCCACCAGCTCGCGCACG	374	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.295	1.565	0.985	0.672	1.465	1.059
Raw	7.401	13.202	7.852	6.431	4.521	2.913

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248505.1	1816	2e-23	549 - 606	100	58 / 58	plus	ABC06939
MLOC	AK357650	1377	2e-23	252 - 309	100	58 / 58	plus	ABC06939
MLOC	MLOC_60618.1	1723	2e-23	214 - 271	100	58 / 58	plus	ABC06939
JLOC1	JLOC1_39544.1	1748	1e-23	214 - 271	100	58 / 58	plus
Harvest21	ABC06939	1691	3e-25	374 - 433	100	60 / 60	plus	ABC06939
Harvest35	U35_15882	532	3e-25	375 - 434	100	60 / 60	plus
Harvest35	U35_15884	1687	4e-24	403 - 460	100	58 / 58	plus

Contig Sequence (532 bp)

>U35_15882 532 Hv_44K_v2
ACACCATCAGTGATTTTTCAGTGGTGCTGCCCAGCTCAGTGCTCTCCACCAGTCCGCCCC
GCCCCGACCCACCCCATCCCGAGCTCCAGGCGCCGACGCACCGAGGACGAGGAGGACGAT
GGAGGCGCGGCGGCGGGCGGCGCTGGTGGCGCTGGCGGTGCTGGCCATGGCGGCGGCGGC
GGCGGAGGGGTACAACATCACCAAGATCCTGGGCGAGTACCCGGAGTACTCGCAGTTCAA
CAAGCTGCTCACGCAGACGCGGCTGGCGCAGGACATCAACAAGCGCCGCACCATCACCGT
CCTCGTCGTCGCCAACGGCGACATGGGCAGCCTCGCCGGCGGCGGCCGCACGCTGCAGAC
CATCCGCCACATGCTTCAGATTCACGTCCTCGTCGACTACTACGGCGGCAAGAAGCTCCA
CCAGCTCGCGCACGGNGTCACCGCGTGCTCCTCCATGTTCCAGGAGTCCGGCGCGGCCCC
CGGCATGTCTGGGTACGTGAACATCACGCAGCACCGGGGCGGCAAGGTGACG

Homology of Contig U35_15882 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g23180.1	416	4e-58	protein\|fasciclin-like arabinogalactan protein 8 precursor, putative, expressed
Brachypodium v1_2	Bradi4g34420.1	414	5e-65
Arabidopsis v10	None