- Probe CUST_22943_PI390587928
- Source Contig U35_15883
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22943_PI390587928 | Hv_44K_v2 | AGTGTGCGTGTTTCGTTGTGTTTATAGTACTACTACTACATATATGAAAGACATCATGGA | 464 | GeneList: None MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.128 | 6.193 | 1.804 | 0.533 | 0.202 | 0.621 |
| Raw | 225.067 | 463.248 | 110.217 | 53.866 | 5.696 | 22.370 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60618.1 | 1723 | 2e-24 | 1420 - 1479 | 100 | 60 / 60 | plus | ABC06939 |
| JLOC1 | JLOC1_39544.1 | 1748 | 8e-25 | 1420 - 1479 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC06939 | 1691 | 3e-25 | 1582 - 1641 | 100 | 60 / 60 | plus | ABC06939 |
| Harvest35 | U35_15883 | 574 | 3e-25 | 465 - 524 | 100 | 60 / 60 | plus |
Contig Sequence (574 bp)
>U35_15883 574 Hv_44K_v2 ACAAGGTCGCCAAGGACAAGGACCTCGCCCCAGCGCCGGCGCCCGAGGGGCCCAAGAAGA AGAAGACCCCCAAGAAGAAGCCCTCCGCGGCCGCCTCGCCATCGGACGACGACGACGATG ACTCCGCCGCGGACTCGCCCGACGACGACTCCTCGTCCGACGACGCCACCGCAGACAAGG ACGGCGCCGCGCCGTCCGCGGTCGCCGGGTGGGTGACCGCCCCCGTGGCCGTGGCGTCGG CGCTGGCACTGGCAGCTTGATAAGGTGTGTGAACTGGTGTGTTTTTGTGCTGAGTTCTCC GAAAATTCGTGGCCCTTGTTATTCAGTGCGGAAAATAAGAAGGGCCGTTTCATTCGTATT TATTACTGCTGCATGTCCTGAAGGAAAAAAGAAGGGAAAAGACAGGAATTTCCAAGGTTT TGTTGTGATGATCATTTTGTAATGATAGTGGTCAATGGGACTGGAGTGTGCGTGTTTCGT TGTGTTTATAGTACTACTACTACATATATGAAAGACATCATGGAGTTTTAGAGTGATGTA GTGCATTTTCTTAGTTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_15883 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |