barSeed - Barley Seed Development Database

Probe CUST_22942_PI390587928

Source Contig U35_15884

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22942_PI390587928	Hv_44K_v2	GTGCGTGTTTCGTTGTGTTTATAATACTACATATGGAAGACATCCTGGAGTTTTAGAGTG	1610	GeneList: yellow MasterList: Structural_proteins_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.281	3.491	1.269	0.632	0.217	0.367
Raw	1006.045	1806.198	543.914	453.658	51.309	93.445

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248505.1	1816	2e-24	1757 - 1816	100	60 / 60	plus	ABC06939
Harvest35	U35_15884	1687	3e-25	1611 - 1670	100	60 / 60	plus

Contig Sequence (1687 bp)

>U35_15884 1687 Hv_44K_v2
TCGAGCTTTGTTGGGCTAGTGGAACGGGCCATCACTACACCATCAGTGATTTTTCAGTGG
TGCTGCCCAGCTCAGTGCTCTCCACCAGTCCGCCCCGCCCCATCCCGAGCTCCAGGCGCC
GACGCACCGAGGACGAGGAGGACGATGGAGGCGCGGCGGCGGGCGGCGCTGGTGGCGCTG
GCGGTGCTGGCCATGGCGGCGGCGGCGGCGGAGGGGTACAACATCACCAAGATCCTGGGC
GAGTACCCGGAGTACTCGCAGTTCAACAAGCTGCTCACGCAGACGCGGCTGGCGCAGGAC
ATCAACAAGCGCCGCACCATCACCGTCCTCGTCGTCGCCAACAGCGACATGGGCAGTCTC
GCCGGCGGCGGCCGCACGCTGCAGACCATCCGCCACATGCTCCAGATTCACGTCCTCGTC
GACTACTACGGCGGCAAGAAGCTCCACCAGCTCGCGCACGGCGTCACCGCGTGCTCCTCC
ATGTTCCAGGAGTCCGGCGCGGCCCCCGGCATGTCTGGGTACGTGAACATCACGCAGCAC
CGGGGCGGCAAGGTGACGTTCACGGCGGAGGACGCGGAGGACAGCGCGCCGTCGTCGGCC
TTCGTCAAGTCCGTCAAGGAGATCCCCTACGACCTGGCGGTGCTCCAGATCAGCAAGGTG
CTGGCCTCGCCGGAGGCCGAGGCGCCCGTGGCGGCGCCGGCGCCGGTCAACATCACCGAG
CTGCTCTCCAAGAAGTACTGCAAGAGCTTCGCGGGCCTGCTGGCGGCCGACGCCGAGGCA
TACAGCACCATCAACGCCACCAAGGACAACGGGCTCACCCTCTTCTGCCCCGTTGACGCC
GCCGTCGCCTCCTTCATGCCCAAGTACAAGAACCTGACGGCCAAGGGGCGGACGGCCATC
CTGCTGTACCACGCCGTGCCGGACTACTACTCCCTGCAGCTGCTCACCTCCAACAGCGGC
AAGGTGAGCACGCTCGCCACCTCCAACGTCGCCAAGAAGGACTACAGCTTCGACGTGGAG
AAGGACGGCGAGACGGCGGAGCTCGACACCAAGGTGAACTCGGCGTCGGTCACCTACACC
ATCAAGGACGACGACCCGCTCGCCGTCTACGCCATCTCCAAGTTCCTGCAGCCCAAGGAG
CTGTACAAGGTCGCCAAGGACAAGGACCTCGCCCCAGCGCCGGCGCCCGAGGGGCCCAAG
AAGAAGAAGACCACCAAGAAGAAGCCCTCCGCGGCCGCCTCGCCATCGGACGACGACGAC
GATGACTCCGCCGCGGACTCGCCCGACGACGACTCCTCGTCCGACGACGCCACCGCAGAC
AAGGACGGCGCCGCGCCGTCCGCGGTCGCCGGGTGGGTGACCGCCGCCGTGGCCGTGGCG
TCGGCGCTGGCACTGGCAGCTTGATAAGGTGTGTGAACAGGTGTGTTTTTGTGCTGAGTT
CTCCGAAAATTCGTGGCCCTTGTTATTCAGTGCGGAAAATAAGAAGGGCCGTTTCATTCG
TATTTATTACTGCTGCATGTCCTCAAGGAAAAAGAAGGGAAAAGACAGGAATTTCCAAGG
TTTTGTTGTGATGATCATTTTGTAATGATAGTGGTCAATGGGACTGGAGTGTGCGTGTTT
CGTTGTGTTTATAATACTACATATGGAAGACATCCTGGAGTTTTAGAGTGAAAAAAAAAA
AAAAAAA

Homology of Contig U35_15884 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g23180.1	416	1e-158	protein\|fasciclin-like arabinogalactan protein 8 precursor, putative, expressed
Brachypodium v1_2	Bradi4g34420.1	414	1e-176
Arabidopsis v10	AT4G12730.1	403	4e-84	\| Symbols: FLA2 \| FASCICLIN-like arabinogalactan 2 \| chr4:7491598-7492809 REVERSE LENGTH=403