barSeed - Barley Seed Development Database

Probe CUST_22933_PI390587928

Source Contig U35_13276

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22933_PI390587928	Hv_44K_v2	GGCCTTTAGTTGAGCATACCGGTTTTGATAGCATTTCTGCCGTTAGTTTCAGTTCAATAA	625	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.196	1.338	1.243	0.754	0.378	0.309
Raw	3127.813	5375.003	4436.080	3991.070	750.813	659.907

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11124.1	4692	2e-24	1027 - 1086	100	60 / 60	plus	None
JLOC1	JLOC1_7330.1	4512	8e-25	916 - 975	100	60 / 60	plus
Harvest21	ABC21656	688	3e-25	626 - 685	100	60 / 60	plus
Harvest35	U35_13276	688	3e-25	626 - 685	100	60 / 60	plus

Contig Sequence (688 bp)

>U35_13276 688 Hv_44K_v2
GAGAAGGCCCAAACTCATGATTTGGGGCCGCTGCCACTGGTGCGGCTAAGGTATGATGCT
GATTGGGCTGATGATGAACGTGATACAGGGCTGAGTCTCCCAGATCGCGACAGTAAAGAG
AGGGGATTTGGTAGGATTGAGACCATGGTTCCAGGGTGCGACTTCTATGGTGCGACAATG
GAGCGCTTAAAAAATGAGTCCTTGGGGAGAGATTACATTGCTCCCAATAAAGAGGGCGTG
CAAGATGGTTTGTGGCGATCTCCTATGCCAAGCCACAATGTGGAGAGGACAGATGGTCGT
CCTCACAGTGCAGGCAAAGGAAGCGGACAGTTACTTTACCATGAAGGCATTACTAACGGT
GCCTCCAAGGATTTGTGCAATACTAGTAAGGAGCCTGCTGTGCGAGCCTATGGACAGATT
GGGACGGAACTGCACGGAAGCGCACATATTGGGGAAACTGCAGGTGAATGTTACAATGAT
AATTCTAATAACTGGTACAGAGGGAAGTCTTTCCAGAATAATCCTGTTTCCAAGGTGATG
CCATATCTTGGTAATAAGGGACCTTTAGTTAACGAGCCAGGAGCAAAATTTGGCAGGGAT
AAGTGGCTCACTGGAGTCCCTGTAAGGCCTTTAGTTGAGCATACCGGTTTTGATAGCATT
TCTGCCGTTAGTTTCAGTTCAATAAAAA

Homology of Contig U35_13276 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g60500.2	2281	3e-101
Arabidopsis v10	None