barSeed - Barley Seed Development Database

Probe CUST_22921_PI390587928

Source Contig U35_25254

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22921_PI390587928	Hv_44K_v2	GAGCAACAACATCACGGCGTGCCTAAACTTCCTGGCCCTAATCTGCACCATCCCAGTGGT	168	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372137	1118	2e-24	86 - 145	100	60 / 60	plus	ABC16070
MLOC	MLOC_45494.1	1241	7e-23	696 - 755	98	59 / 60	minus	ABC16070
JLOC1	JLOC1_29538.1	1060	4e-23	713 - 772	98	59 / 60	minus
Harvest35	U35_25254	979	3e-25	169 - 228	100	60 / 60	plus

Contig Sequence (979 bp)

>U35_25254 979 Hv_44K_v2
ATTGTACAAGGGGGCAAGAGGTAAAGTGTCCGCCCCACCAAGAAACCCAAGTCGTCATTC
GTCAGTCGTCTCACTCACAGTCACGGGCTCACTCCACTTCGCCCACTCTCACTCACCCGC
TCCGTCCGTCTCCGTCCGGCCGGCAGCCCGCGCCGCGGCCATGGCGGTGAGCAACAACAT
CACGGCGTGCCTAAACTTCCTGGCCCTAATCTGCACCATCCCAGTGGTCGCTACGGGCCT
CTGGTTCGCGTCCAAGCAGGGCGCCGAGTGCGCGCGCCTGGCGCGCTGGCCCGTGGCCAT
CCTCGGCGGCCTCCTCCTGCTCGTCGCCCTCGCGGGCTTCGTCGGCGCCTACTGGAACCG
ACAGGGCCTGCTGGCCGCCTACCTCTTCGCCATGGCGGCCCTCATCACGCTCCTCCTGGC
CCTCCTCGTCTTCGCCTTCGCCGTCACCCACGGCTCCGGCGCCTACGTCGTGCCCGGCCG
CGCCTACCGCGAGTACCGCCTCGAGGGCTTCTCCGGCTGGCTGCGCGGGTACGTCGCCGG
GGACCCGCGCCGGTGGGACGGGATCAGGGCGTGCCTCGCCGCGTCGGACACCTGCAGGAA
GCTCACCGTCGAGGCCGCCTTCTTCATCGCCCCCGAGCAGTTCTACCAGTCCGACCTCTC
GCCGCTCCAGTCCGGCTGCTGCAAGCCGCCGACGGCGTGCGGGTACGCGTACGTGTCCCC
GACGGTGTGGGCGAGCCCGGGGAACCCGGCGGCGGACGCGGACTGCGGCGCCTGGAGCAA
CGACCCCCGGCAGCTCTGCTACTGGTGCACCTCCTGCAAGGCCGGCATGCTGGGCACCCT
GCGCGACCAGTGGCGCCGGGCCAACGTGGCGCTCGTCGCCGCCACCGTCGCGCTCCTCGT
CGTCTACGTCATCGGCTGCAGCGCCTTCAAGAACGCGCAGACCGAGGACCTCTTCCGCCG
CTACAAGTGGAGCAACAAC

Homology of Contig U35_25254 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g37510.1	273	1e-121	protein\|tetraspanin family protein, putative, expressed
Brachypodium v1_2	Bradi1g37460.1	289	2e-114
Arabidopsis v10	AT2G19580.1	270	1e-80	\| Symbols: TET2 \| tetraspanin2 \| chr2:8472393-8475021 REVERSE LENGTH=270