- Probe CUST_22914_PI390587928
- Source Contig U35_37233
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22914_PI390587928 | Hv_44K_v2 | AGTTAGAGGAAAAAAGACTGCCTATGGAATAAATTAAAGCTACTCGTTGTAAGATGGGGC | 339 | GeneList: plum2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.023 | 0.119 | 0.897 | 2.644 | 1.684 | 1.674 |
| Raw | 3.305 | 33.345 | 269.910 | 1096.551 | 295.046 | 306.158 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_6219.1 | 1733 | 2e-24 | 1254 - 1313 | 100 | 60 / 60 | plus | ABC32962 |
| JLOC1 | JLOC1_4043.1 | 1465 | 8e-25 | 1136 - 1195 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32962 | 435 | 3e-25 | 340 - 399 | 100 | 60 / 60 | plus | ABC32962 |
| Harvest35 | U35_37233 | 435 | 3e-25 | 340 - 399 | 100 | 60 / 60 | plus |
Contig Sequence (435 bp)
>U35_37233 435 Hv_44K_v2 GCGAGAATGCACTCATGTGGTCGGTGTTCAAACACCCTGTCACTGTAGGCATCGACGCCA ACAGCCCGGCTTTCCTACATTACCGCGGCGGCCTCTTCGACGGGCCCTGCAACACCACCC TCGATCACGTCATGACCCTCGTTGGCTATGGCACTACGAGACACAATGACCCTTACGGCG AGCCGGCGGGAGTCGACTTTTGGATCCTCAAGAACTCCTGGTCCACGGCATGGGGCGAAG CCGGCTATATGAGGCTCCGGCGTGGTGCCGAGGCCAAAGGTGGGGTCTGCGGGGTAATGC TCGATATCACTTATCCGGTCCGTTCCTATAAGCTATATTAGTTAGAGGAAAAAAGACTGC CTATGGAATAAATTAAAGCTACTCGTTGTAAGATGGGGCAAANNAAAAAAAAAANAANAA AAAAAAAAAAAAAAA
Homology of Contig U35_37233 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |