- Probe CUST_22905_PI390587928
- Source Contig U35_49212
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22905_PI390587928 | Hv_44K_v2 | AAAGGCTGCGTTTGCTTTTGCCCCGAAATAAAGCCCTTATCCTTGGGTTATGTGAAAAAA | 11 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.670 | 3.438 | 2.053 | 0.612 | 0.198 | 0.251 |
| Raw | 19534.130 | 28804.827 | 15072.197 | 6924.460 | 774.242 | 1100.945 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_49212 | 226 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (226 bp)
>U35_49212 226 Hv_44K_v2 TTTTTTTTTTTTTTTTTCACATAACCCAAGGATAAGGGCTTTATTTCGGGGCAAAAGCAA ACGCAGCCTTTCCCAACCCTAAAAGGGCTCAAAACATAACCGTAATAACAAATCCTCCGC CTAAAAAACAGCATGTAAAATAAGGGAAGGGAAACAGGATAGTTGATAGGCCGCCGGGGC AAAGTTCCCGTTGGCGCCGTTGCTAAAACTCAGGCTAAGGCCACCC
Homology of Contig U35_49212 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |