barSeed - Barley Seed Development Database

Probe CUST_22898_PI390587928

Source Contig U35_13288

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22898_PI390587928	Hv_44K_v2	AATGACCTATGAGCATGTTGAAGCATCTCCCATGTCAGACACAGAGGAGGATAATCCTGA	517	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.578	1.140	1.284	1.247	0.549	0.797
Raw	8.622	24.700	25.409	38.663	4.510	9.843

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360542	2420	2e-24	976 - 1035	100	60 / 60	plus	ABC25398
MLOC	MLOC_52030.1	2022	2e-24	1331 - 1390	100	60 / 60	minus	None
JLOC1	JLOC1_33282.1	2053	8e-25	643 - 702	100	60 / 60	plus
Harvest21	ABC26009	635	3e-25	518 - 577	100	60 / 60	plus
Harvest35	U35_13288	635	3e-25	518 - 577	100	60 / 60	plus

Contig Sequence (635 bp)

>U35_13288 635 Hv_44K_v2
GAGGAGTTTGTCATCCCCGTCGCCGCCTGGGAGGCCCGCAAGGCGCGCTCCAGCTCCGAC
CTCCTCTCCCGCCCCCGTCCGGACCCGGACTCGTCGGCTCTTCCCGTGGAGGAGCCCGCC
CCCGTCGTCCGAACCGTCTCCGCCCCCGAGGTCCCGTGGCCCGCTCCTCACACCTTCCCC
GACCCCATTCCCGAGGAGTCCATCCACTCCTCCTCCGCTTCCACCGCCACTGACTCCGTG
GAGGAACCCGTCGCTGCGGCACCGCAGGAATCCCCCAAAGCAACCCGTGCGGTTGCTGTT
GCGGCGCCCGTCGCGGCCTTGTCGCTTCTCTCGCCGAGAAGGGGCGGCGGGGAGGTGGGG
ATCCGGGGCGTCCGGCCGCCGGTGCTCTCCCCGCCTCCACCGATCACGGGGCTCGCACCC
CCACCGGCGAGGCAGTCGTCTGTGGCTGATATCATGAGCGGATCGGCCTGGGACATTGTG
AACTCTTTCGCTCCACGGAGGGGAATAGTGAACTGAGAATGACCTATGAGCATGTTGAAG
CATCTCCCATGTCAGACACAGAGGAGGATAATCCTGAGGAGAACGATGAAGGATTGACAG
GGGCTTGAGGGGGAGCTGAAAGGCTGGAGGGTTGG

Homology of Contig U35_13288 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None