barSeed - Barley Seed Development Database

Probe CUST_22893_PI390587928

Source Contig U35_25260

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22893_PI390587928	Hv_44K_v2	GTCAACATCATTGTCGTTCTATGCTTTCTCACCCTCTTCCTGAGCCTGGAGCTATTTTTC	461	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356412	2998	7e-23	1670 - 1729	98	59 / 60	plus	None
MLOC	MLOC_56272.3	2236	7e-23	1099 - 1158	98	59 / 60	plus	None
MLOC	MLOC_56272.2	2213	7e-23	1099 - 1158	98	59 / 60	plus	None
MLOC	MLOC_56272.4	1807	7e-23	573 - 632	98	59 / 60	plus	None
MLOC	MLOC_56272.5	1707	7e-23	573 - 632	98	59 / 60	plus	None
JLOC1	JLOC1_36382.3	1844	4e-23	419 - 478	98	59 / 60	plus
JLOC1	JLOC1_36382.2	1767	4e-23	442 - 501	98	59 / 60	plus
JLOC1	JLOC1_36382.1	1906	4e-23	581 - 640	98	59 / 60	plus
Harvest21	ABC25863	515	6e-22	462 - 515	100	54 / 54	plus
Harvest35	U35_25260	531	3e-25	462 - 521	100	60 / 60	plus

Contig Sequence (531 bp)

>U35_25260 531 Hv_44K_v2
TCTCTGTTAGATCTGTCCAGCTTACCTTTGTGTGTCTTGTTCTTCCATGCCTTCTACTGG
GTTACCTAGGGCAAGCTGCATTTCTTATGGAAAACTTGACTGAAAATGAGCAGGTCTTCT
TTTTATCTATCCCGAGTCAGGTGTTTTGGCCAGTGGTGTTCATAGCTACTCTGGCGGCAC
TAATTGCTAGTCGTACTATGACAACTGCTATTTTCTCAATCATTAAGCAGGCCACAGCTC
TTGGCTGTTTTCCCCGCCTCAAGATTATTCACACTTCAAGAAAGTTCATGGGTCAAATAT
ACATCCCAGTGATGAACTGGTTTTTGCTGGTTTCCTGTCTTGCGTTTGTTACGACATTTG
GGAGCATTAATGAGATTGGCAATGCATATGGTATAGCTGAACTTGGGGTCATGATGATGA
CTACTATATTGGTGACCATCATAATGCTTCTGATATGGCANGTCAACATCATTGTCGTTC
TATGCTTTCTCACCCTCTTCCTGAGCCTGGAGCTATTTTTCTTTTCTTCTG

Homology of Contig U35_25260 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g32530.1	860	2e-65	protein\|potassium transporter, putative, expressed
Brachypodium v1_2	Bradi1g26560.1	851	1e-70
Arabidopsis v10	AT5G09400.1	858	3e-53	\| Symbols: KUP7 \| K+ uptake permease 7 \| chr5:2916377-2920604 FORWARD LENGTH=858