barSeed - Barley Seed Development Database

Probe CUST_22892_PI390587928

Source Contig U35_49219

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22892_PI390587928	Hv_44K_v2	GATATTTGTGGTTGCAGTTAGAGTTTCCATAATATCGACGATCCAATGAAATTGGCTTTA	16	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_16021.1	1162	2e-24	1030 - 1089	100	60 / 60	plus	None
Harvest35	U35_49219	334	3e-25	17 - 76	100	60 / 60	minus

Contig Sequence (334 bp)

>U35_49219 334 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAGCCAATTTCATTGGATCGTCGATATTATGGAAACTCTAAC
TGCAACCACAAATATCATTATCTTCACCACATTTCAATCAAATCCAAAAGTACAAACCCA
ACCGTAATACTCAACGTAGCAATTCCCATCTCACTGACACCGCCAAAACACACGCTACAA
CAATAAACACGCAGTGATCAAGCAAACTATGCTTTCACCAGAGGATTCACCAGATCCTTG
AGCGCCGGCGGCCACGCCACCATCTCGTACGGGTAGAGGTCGCCGAGGGGTCTCGCCTCG
TCGTCGTTGTGCCAATAGCCTCTCCATCTTCAAC

Homology of Contig U35_49219 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None