barSeed - Barley Seed Development Database

Probe CUST_22889_PI390587928

Source Contig U35_25263

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22889_PI390587928	Hv_44K_v2	TTTCGTGCTCATACTCTGCCTCCTGGGCCTCTACGAGTTCCCCTACACCCCCGAGGAGCA	205	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.165	0.197	0.547	1.678	1.761	2.411
Raw	14.541	27.471	64.729	293.595	116.525	172.811

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7452.1	1516	2e-24	493 - 552	100	60 / 60	plus	ABC22954
JLOC1	JLOC1_4915.1	1351	8e-25	326 - 385	100	60 / 60	plus
Harvest21	ABC22954	487	3e-25	206 - 265	100	60 / 60	plus	ABC22954
Harvest35	U35_25263	487	3e-25	206 - 265	100	60 / 60	plus

Contig Sequence (487 bp)

>U35_25263 487 Hv_44K_v2
GCCCACTCGCGTCTTGCCTTGTGAAGCCGAAACGCGCACGCGCGCACGGCGTCCACTCGC
GTTTTACTGCTGCCGCCTTTTGCGCTCCGGCGGCAGCGAAGTGCTCTCGCCTGCCGGCGA
TGACCTTCCCGCTGGTGTGCTACTGCAACGCGGTGCCCCGGCCCATCGCCGCCGTGTTCA
AGTTTTTCCACGCCACCGCGCTGGCTTTCGTGCTCATACTCTGCCTCCTGGGCCTCTACG
AGTTCCCCTACACCCCCGAGGAGCACGCGGCGCTCATCAACGGCCACCGCCGCCGCCCCA
ACCGGGACGGCACGCTTCCGGAGACGGTGAAGCAGCGGCTGCCCCCCGTCGAGCTGGTCG
TGCACCTGGCGGAACGGTCGCGATCGTCGACGTCGAAGAGGGCGGCGCCGGCGGGTCGCT
ACACCGACGGGGGCGACGCGAGTACGTGCAGGGTGTGCCTGGAGCGTCTGGAGCTGACGG
ACGAGGT

Homology of Contig U35_25263 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None