barSeed - Barley Seed Development Database

Probe CUST_22884_PI390587928

Source Contig U35_25269

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22884_PI390587928	Hv_44K_v2	TATGTAGGTCAGTATTAACTTACCAGATAATGAGCATTCATCAATCCTGCAGTAATAGCT	589	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_30901.4	1786	2e-24	1600 - 1659	100	60 / 60	minus	ABC11959 ABC11960
MLOC	MLOC_30901.5	1273	2e-24	1089 - 1148	100	60 / 60	minus	ABC11959 ABC11960
MLOC	MLOC_30901.1	1100	2e-24	920 - 979	100	60 / 60	minus	ABC11960
MLOC	MLOC_30901.3	716	2e-24	536 - 595	100	60 / 60	minus	ABC11959
MLOC	MLOC_27256.2	1789	2e-24	1605 - 1664	100	60 / 60	minus	ABC11959 ABC11960
MLOC	MLOC_27255.1	720	2e-24	536 - 595	100	60 / 60	minus	ABC11959
MLOC	MLOC_27255.2	1293	2e-24	1108 - 1167	100	60 / 60	minus	ABC11959 ABC11960
MLOC	MLOC_48469.2	467	7e-23	29 - 88	98	59 / 60	minus	None
JLOC1	JLOC1_20383.3	686	8e-25	126 - 185	100	60 / 60	plus
JLOC1	JLOC1_20383.2	484	8e-25	126 - 185	100	60 / 60	plus
Harvest21	ABC22610	681	3e-25	590 - 649	100	60 / 60	plus
Harvest35	U35_25269	681	3e-25	590 - 649	100	60 / 60	plus

Contig Sequence (681 bp)

>U35_25269 681 Hv_44K_v2
CACTTTGATGTGTTAGTATTAGAATGAAAAATACTTGCAATTNTAGTTTGCATCTACACT
CTGATGCTCATGGTTTTGATGTACATCTAATGCTTATGGTTTTGAAGTACATATCAGTGC
ACAATTGTTAACGTATGATTCATATAGAACTTGATGAATTCCAGAGTTATACTTTCATGA
TTTCATAAGATATTTGACTCAAAAATTCAGTTCCAATTTGACGAGCAAGCTGTCTTAGAA
AATTGACAGCTGAAGGCATGAATGGCTGAAGGTGACTGTTTCATTTCTTATAATCAATAG
CTACAAACTTCTTCTAGCTCTAAAATGAGGCATAATGCAACTTATGCCAGTAAGTGGAGG
ATGCCTCAAAAGAGTGTGGTGACTGCTTTGAAAAGGCATCACGTCCTAACATAAACGAAG
AGGAGAAAAGGAAGATCCTTCACATTGTGATTATTAGTGGTGGACCCACTTGAGTTGAAT
TTGGTGCAGAGTTGAATGTTTTTCTTGTCGAAGTAATGGTGAAGCTATATCCTGCAATTG
AAGAATTTTTTAAGATAAGAATTATTCAGCCACGAGAGCATATATTGAATATGTAGGTCA
GTATTAACTTACCAGATAATGAGCATTCATCAATCCTGCAGTAATAGCTAAAATAACTAT
TATATGTTAACCGCTCATCAC

Homology of Contig U35_25269 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None