barSeed - Barley Seed Development Database

Probe CUST_22878_PI390587928

Source Contig U35_37249

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22878_PI390587928	Hv_44K_v2	AAGAAAGTACTTGATTTCCTTCTGATTACTATCGTTCTGGATTCTTAGCTGGTGGCAGCA	22	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_38901.4	1972	2e-24	380 - 439	100	60 / 60	plus	ABC43772
MLOC	MLOC_38901.2	2854	2e-24	1294 - 1353	100	60 / 60	plus	ABC43772
JLOC1	JLOC1_25333.4	1865	8e-25	261 - 320	100	60 / 60	plus
JLOC1	JLOC1_25333.3	1999	8e-25	395 - 454	100	60 / 60	plus
Harvest21	ABC32989	490	3e-25	23 - 82	100	60 / 60	plus
Harvest35	U35_37249	490	3e-25	23 - 82	100	60 / 60	plus

Contig Sequence (490 bp)

>U35_37249 490 Hv_44K_v2
GCTTGTTTCTTCTGGTTTATGAAAGAAAGTACTTGATTTCCTTCTGATTACTATCGTTCT
GGATTCTTAGCTGGTGGCAGCATGCAACAAACCTTGCAAGCTACGAGCAACAGGACGCAC
ATGAATTTTTTATCTCCATCCTTGACCATATTCATGAAAATATAAAGGATGATCAGCCTA
AATCACATGAACAAGGCGATGGAGACTGTTGCATTGCACACCGGGTGTTTTCTGGTATCC
TGAGATCAGACGTCATCTGCACAAATTGTGGGTTCTCATCAACAACGTTCGAACCTTGCA
TGGACGTCTCTTTAGACTTGGATTCTGGGCATAACAATTGTCTTGGTGTTGCAAACCCAA
AGCCGCATGCGCGCAACGGCATGAGTTCCAAGGTATCTACACTCATGAGATGTTTGGAGC
GGTTTACCAGGGCTGAGAGGTTAGATGCTGAACAGAAGTACTTCTGTGAACGTTGCAAGG
AGAGGCAAGT

Homology of Contig U35_37249 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g55360.1	371	9e-81	protein\|ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
Brachypodium v1_2	Bradi5g23920.1	564	3e-79
Arabidopsis v10	None