barSeed - Barley Seed Development Database

Probe CUST_22876_PI390587928

Source Contig U35_49220

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22876_PI390587928	Hv_44K_v2	TCCGTACTCGTTGCAATTTGTTTTCTGAGCAGCAAAGATTGTATTGTGCTCCGTAAAAAA	11	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	13.285	5.811	1.420	0.620	0.151	0.156
Raw	2059.823	1541.267	306.742	210.357	18.325	21.389

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7957.1	595	9e-22	477 - 531	100	55 / 55	plus	None
Harvest35	U35_49220	380	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (380 bp)

>U35_49220 380 Hv_44K_v2
TTTTTTTTTTTTTTTTTACGGAGCACAATACAATCTTTGCTGCTCAGAAAACAAATTGCA
ACGAGTACGGATCAAACAAGTAAATGCAACAAAGTGAGCTACAGTACTACTACTCCCCAA
ACGGACTGAAAAATAAATGAAGGCATTTATTTCTCCTCCGGATCTCATGCAGCTGGAGTA
CGAGACCATCCATTTTGCCTGCTCCCACGGCGTCTACACCAGCGTCCTGCACTGCGACGT
TGTCGGGTCCCACAGCGCCGGGAGCAGGAACTTCCTCCCGCTCAGCCCGACGGCGTTGTA
GCTCGCGCCGGTTGCCCGGTCCACGAGCAGCCTCCCCGGGTAGCCGGGGTAGGCGCCGCT
CCCGAAGATGCCGGCGCACG

Homology of Contig U35_49220 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None