barSeed - Barley Seed Development Database

Probe CUST_22875_PI390587928

Source Contig U35_13292

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22875_PI390587928	Hv_44K_v2	TTAATATAAACGCACGTACCCAAAGCCCAGCTAGCGAGCGCCTTCACACGCACCACTGTA	61	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367837	1792	2e-24	302 - 361	100	60 / 60	plus	ABC16487
MLOC	MLOC_73253.1	1029	2e-24	530 - 589	100	60 / 60	plus	None
JLOC1	JLOC1_48762.1	805	8e-25	297 - 356	100	60 / 60	plus
Harvest21	ABC47120	294	3e-25	59 - 118	100	60 / 60	plus
Harvest21	ABC47119	481	3e-25	65 - 124	100	60 / 60	plus
Harvest35	U35_13292	478	3e-25	62 - 121	100	60 / 60	plus

Contig Sequence (478 bp)

>U35_13292 478 Hv_44K_v2
CCCTTGCTTCCTCTGTCTCCCTGCTCCTGCTCTGCTCTCCCCAACCCCAGTCACCACCAG
GTTAATATAAACGCACGTACCCAAAGCCCAGCTAGCGAGCGCCTTCACACGCACCACTGT
ACCCCTACTATCCTGCCTTTTGGTGTGACGCTACCTGCGACGAGTCGAGGCATGGCACTC
ACGGCGTTCGAGACCGCGGAGCAGCGCCTGCCGTGCCGCGTCGAGCAGGCCGACGCAGGC
GGCAAGGTGGTGGTCGCTGCTGCCGAGCAGGCCGTGCCGCCGCAGGAGGCGGACCGCGGC
GGCCGTCTCGAGAGGGACGACATATGGAACATGATCCAGTCGCAGAAGCCGCCCGCGGCC
CCGGCGCCGAGGCAGGCGCCGTACGTGCCCGCGCCCGTGCGCCGCTCCTCCAGCCTGCTC
ACCCAGAAGAGCCTGGAGATCTGCACCGAGAGCCTCGGCTCCGAGACTGGCTCCGATG

Homology of Contig U35_13292 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None