- Probe CUST_22873_PI390587928
- Source Contig U35_49222
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22873_PI390587928 | Hv_44K_v2 | TGTAAAAGATGGGTCTCCTGACCTGAACAATATAATCACGTCAGATACCGCGCCAAAAAA | 11 | GeneList: mediumpurple3 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.963 | 3.598 | 0.629 | 0.492 | 1.070 | 0.953 |
| Raw | 39.730 | 36.670 | 5.520 | 4.856 | 3.849 | 3.639 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60329.3 | 2189 | 3e-21 | 24 - 77 | 100 | 54 / 54 | minus | None |
| MLOC | MLOC_60329.2 | 2030 | 3e-21 | 24 - 77 | 100 | 54 / 54 | minus | None |
| MLOC | MLOC_60329.1 | 1386 | 3e-21 | 24 - 77 | 100 | 54 / 54 | minus | None |
| MLOC | MLOC_60329.4 | 2068 | 3e-21 | 24 - 77 | 100 | 54 / 54 | minus | None |
| JLOC1 | JLOC1_39327.2 | 2160 | 2e-21 | 1992 - 2045 | 100 | 54 / 54 | plus | |
| JLOC1 | JLOC1_39327.1 | 1205 | 2e-21 | 1037 - 1090 | 100 | 54 / 54 | plus | |
| Harvest35 | U35_49222 | 381 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (381 bp)
>U35_49222 381 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGCGCGGTATCTGACGTGATTATATTGTTCAGGTCAGGAGACC CATCTTTTACAACAAGTACTACCTACTGAATCCTCCCTTTGGTTGGAAAATAGTAGTGAT AAACAGACTGATTCATCGGTCAATAGTGTAGTAACTTCCAGAACGAAAGAAAAAAAGAAA GACTGAATTTGTTGGGGCTACTATCCAAGCTAGCTAGGTGCACCTGACGTTCCTCCCTGG CCCTCCGTAGTAAAAGTAGTTCCCCCAGACGGCGTTGACCCCGCCCTGGATGTCGTAACA GTTGGGGTGGTCGGCAGTGACGTGGAAGGTGTTGAGCGGGATGAGGCTGTTGTCCCAATC CACCACCTCCAGGTTGCGGAA
Homology of Contig U35_49222 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |