barSeed - Barley Seed Development Database

Probe CUST_22867_PI390587928

Source Contig U35_49225

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22867_PI390587928	Hv_44K_v2	CTACGTATCTATGGACCTTGTATTAGCACTTTATTAAGCTTTATGTGATCAGCGTATGTT	21	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.187	1.696	1.129	0.823	0.263	0.344
Raw	53.296	113.959	68.232	80.151	8.741	12.306

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_49225	433	3e-25	22 - 81	100	60 / 60	minus

Contig Sequence (433 bp)

>U35_49225 433 Hv_44K_v2
TTTTTTTTTTTTTTTTTGTTTAACATACGCTGATCACATAAAGCTTAATAAAGTGCTAAT
ACAAGGTCCATAGATACGTAGGTAGCAACTAGCAAGTGAACAACGGTAGCGAACACAGAC
AGGGCAGGTAGATTCAACAAACTGTACAAAACGCGCAACTAAAGCCCAATCAAGATGCTA
TATGATCGGAAGAGTACTACTTCAGACATTACCAGCATAGGCATCCTCTCGATGCGGCGC
AGCACCGTTCCCACAAGCCTGTCGATCGAGGGGCACTAGCCTGAGCCAGAAAGTCCGGCG
AGGTGCACAGGCTGATTATTTTTTAAGCCCAGACCACCCGAGCCTCCGGTACCACCTGCC
AAAGTAGGGGGATAGTGCCCAAACTGATCACTTCTGAAGCGGAAACCAAGGCCGCCGTTG
GCGTCTCCAGCAA

Homology of Contig U35_49225 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None