barSeed - Barley Seed Development Database

Probe CUST_22864_PI390587928

Source Contig U35_13299

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22864_PI390587928	Hv_44K_v2	ATTGTAGAGTTGTTTCTTCGATCTTGGTAGTTTGTGGCAATATACCATAATTAGCTTGCT	410	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72444.1	1885	2e-24	177 - 236	100	60 / 60	plus	ABC10067 ABC10068
Harvest21	ABC22335	492	3e-25	411 - 470	100	60 / 60	plus
Harvest35	U35_13299	493	3e-25	411 - 470	100	60 / 60	plus

Contig Sequence (493 bp)

>U35_13299 493 Hv_44K_v2
GTCAGCTGGGAGCTGCAGCAGCACACTGCAAGCTTGACCCTGCCATTTCTTTTCTTCTAA
AGCAATTGTGCGGCCAAGAAATATACAGGTATGCTTTGACAGAGATGGCCCAGGATCTGC
CTGACCTTCCTATTGGGATGCTTACAGATGTCCATTTGAAGAGAGGTTTGTTTGCCCTTC
AACAATTCTTCTTGCTGCATTTATCGGCCTGTATCTTTCTTCAAGTATGTACAAGTTGTT
GTTGAGACTGTGAATATGATGCTTCCAAATGCCGTTGCTATCTATGTATCATACTTGTAT
TTCTTCACTAGGTATAGTGTGGCATTCTAATTATGCTTCTATTTTGTATACTCTTGTTTT
ATGTTGAGATAGCATGGAACTGATGCCTCCAAAATCCATGATTCCTAAGCATTGTAGAGT
TGTTTCTTCGATCTTGGTAGTTTGTGGCAATATACCATAATTAGCTTGCTAAAATAGTTT
TTCTTACTGAAAA

Homology of Contig U35_13299 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None