barSeed - Barley Seed Development Database

Probe CUST_22850_PI390587928

Source Contig U35_37257

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22850_PI390587928	Hv_44K_v2	TTCAGGTATAATGAGTACATGCAGCTGCGCATGAGGAACAAGACCCACCCGCCGTCCAGG	216	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_15558.2	941	2e-24	511 - 570	100	60 / 60	plus	None
MLOC	MLOC_15558.1	1139	2e-24	864 - 923	100	60 / 60	plus	None
JLOC1	JLOC1_10682.1	1296	8e-25	853 - 912	100	60 / 60	plus
Harvest21	ABC32999	362	3e-25	217 - 276	100	60 / 60	plus
Harvest35	U35_37257	362	3e-25	217 - 276	100	60 / 60	plus

Contig Sequence (362 bp)

>U35_37257 362 Hv_44K_v2
GCGGAGCCCGTGGAGGGCAGCATCGTCGTCAACGTGGGCGACGTTCTGCAGGTGCTCAGC
AACAACAAGTTCAGGAGCGCCACGCACAGGGTGGTGAGGAGGCCGGGGGCGCACCGCCAC
TCCATCGCCTTCTTCCTGAACCTCCACGGCGACAAGTGGGTCGAGCCGCTGCCGGAGTTC
GCGGGCGGCGCCGGCGAGCCGCCGCGGTACAGAGGGTTCAGGTATAATGAGTACATGCAG
CTGCGCATGAGGAACAAGACCCACCCGCCGTCCAGGCCCGAGGATGTCGTACACATCACC
CATTACCAAATCTAGCTCGCGAAAGCTTGCTTCCATGATCCATGGCGTACTCTACCTTTT
TT

Homology of Contig U35_37257 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g55070.1	327	4e-53	protein\|gibberellin 20 oxidase 2, putative, expressed
Brachypodium v1_2	Bradi5g23690.1	327	6e-58
Arabidopsis v10	None