barSeed - Barley Seed Development Database

Probe CUST_2284_PI390587928

Source Contig U35_2940

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2284_PI390587928	Hv_44K_v2	GTGCTTGAAATATGTACATTCATGGTTCGAATCAACATGAGTTCTCGCAAACTTTTGAAA	2211	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68623.1	2569	6e-24	2240 - 2298	100	59 / 59	plus	ABC07074
MLOC	MLOC_68622.1	3320	6e-24	3046 - 3104	100	59 / 59	minus	ABC07074 ABC40042
JLOC1	JLOC1_45414.1	5548	3e-24	2350 - 2408	100	59 / 59	plus
JLOC1	JLOC1_45413.3	3146	3e-24	2732 - 2790	100	59 / 59	minus
JLOC1	JLOC1_45413.2	3164	3e-24	2750 - 2808	100	59 / 59	minus
JLOC1	JLOC1_45413.1	3139	3e-24	2725 - 2783	100	59 / 59	minus
Harvest21	ABC07074	2020	1e-24	1904 - 1962	100	59 / 59	plus	ABC07074
Harvest35	U35_2940	2335	3e-25	2212 - 2271	100	60 / 60	plus

Contig Sequence (2335 bp)

>U35_2940 2335 Hv_44K_v2
GCCTGTAGCTAGCAACCTCTCTCTCTCTCTCTCTCTTGCCACAATAATTCCGCATGGTGG
GGATGAGCGGCGCCTACGGCGGCCACCACGGCAATGGCGGCGAGGGCCGGGCGGCTCCCA
AGCAGGCCGTGGTAGTCGGTGCGCCACCGCCGGCGGAGATGGAGATGGAGATTGGGGTGG
TGCACAAGGTGGCGGCGCAGCCGGCGCAGAGCACGGCGAGCAAGATGAAGGGGAAGGTGA
AGGAGACCTTCTTCCCCGACGACCCGTTCCGGAGCTTCAAGGGGCAGCCGGTGCGGGCGC
AGTGGGTGCTGGCGGCCAAGTACCTGTTCCCCGTGCTGGAGTGGGTGCCCGGCTACTCCC
TCTCCCTCTTCAAGTCCGACCTCGTCGCCGGCCTCACCATTGCCAGCCTCGCCATCCCCC
AGGGTATTAGCTACGCCAAGCTTGCCAACCTGCCGCCGATCATAGGCCTATATTCGAGCT
TCGTGCCGCCGCTGGTGTACGCGGTGCTGGGGAGCTCGAGGGACCTGGCGGTGGGGCCGG
TGTCGATCGCGTCGCTGATCATGGGGTCGATGCTGCGGCAGGCGGTGAGCCCGTCGGCGT
CGCCGGCGCTGTTCCTGCAGCTGGCCTTCACGTCCACCTTCTTCGCGGGGCTGGTGCAGG
CGTCGCTCGGCATCCTCCGCCTGGGATTCATCATCGACTTCCTCTCCAAGGCGACGCTGG
TGGGGTTCATGGCCGGCGCCGCCATCATCGTCTCGCTCCAGCAGCTCAAGGCCCTGCTCG
GCATCGTCCACTTCACCACCCAGATGGGCATCGTCCCCGTCATGGCCTCCGTCTTCCAAC
ACACCAACGAGTGGTCGTGGCAGACGATACTGATGGGGGCATGCTTCCTGGTGCTCCTGC
TAGCGGCCAGGCACGTGAGCATGAGATGGCCGAAGTTCTTCTGGATCTCAGCGTGTGCTC
CCTTGGCGTCCGTCATCGTATCCACGCTGCTCGTCTTCCTGTTCAAAGCACAGAACCACG
GCATCAGCATCATTGGATCGCTCAAATGTGGCCTGAACCGCCCCTCATGGGACCAACTGC
TCTTCGATACCACATATCTTGGACTCACCATGAAGACCGGCCTCGTCACCGGAATCATCT
CCCTGACGGAAGGGGTAGCAGTTGGTAGGACGTTCGCATCACTCAAGGACTACCAGGTGG
ATGGAAACAAAGAGATGATGGCCATTGGGTTGATGAACATTGTGGGCTCATGTACATCAT
GCTATGTGACAACAGGAGCATTCTCTCGCTCTGCTGTGAACCACAATGCTGGCTGCAAGA
CCGCCATGTCCAACGTGGTCATGGCACTGACGGTCATGGTCACGCTGCTGTTCCTCATGC
CATTGTTCGTATACACGCCGAATGTTGTCCTTGGAGCAATCATCATCGCTGCTGTCATTG
GCCTGATCGATCTCCCTGCTGCATACAACATCTGGAAGATGGATAAGATGGATTTCCTCG
TGTGCCTTTGCGCATTTGCTGGTGTCATCTTCATCTCGGTCCAGGAAGGCCTCGCGATTG
CGGTCGGTATATCCATATTTAGGGTATTGATGCAAATCACAAGGCCAAGGATGATGATTC
AGGGGAACATTAAGGGAACAGATATTTACCGGAACCTCCATCAGTATAAGGAGGCTCAAA
GAGTTCCTGGATTCTTGATACTGACAATTGAGGCTCCTATAAACTTTGCAAACACCAACT
ACCTAAATGAAAGGACTAAAAGATGGATAGAGGATGAAAGTTTTTCAGGGAATAAACAAA
GTGAACTCCGTGTCGTAATCTTGGATCTATCAGCTGTCCCTGCAATTGACACAAGCGGCA
TAGCATTCCTCATCGACCTAAAGAAATCAACAGAGAAGCATGGCCTAGAGCTTGTACTTG
TGAATCCAACCGGAGAGGTTATGGAGAAAATACAACGAGCGAACGATGCACACAATCATT
TCAGGCAGGACTGCCTCTATTTGACCACCGGGGAAGCAATCGCTTCACTTTCTGGATTTG
CCAAGATGGCAACACCTTAGAGCGGTTTTGCCGAATTGCCATTTTGATCATCTGATTGCA
ATGCTAAATTTGCATTGCCTTCTCATCAGTGAATATGCCTGCAACAAAGCATTTCACAAG
TTTGTTTGTAGCTATCTTCAGTGCCCTTCAAGTCTATGTGATGGAAATTAGGTGCTTGAA
ATATGTACATTCATGGTTCGAATCAACATGAGTTCTCGCAAACTTTTGAAAAAAAAACTT
CGGTGTTAAGAACTAGTAGATGTTTAACTGTAGAAACTGTAACTGGATTACTTTT

Homology of Contig U35_2940 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g55800.1	662	protein\|sulfate transporter, putative, expressed
Brachypodium v1_2	Bradi5g24170.1	655
Arabidopsis v10	AT1G23090.1	631	\| Symbols: AST91, SULTR3;3 \| sulfate transporter 91 \| chr1:8185238-8188954 REVERSE LENGTH=631