barSeed - Barley Seed Development Database

Probe CUST_22848_PI390587928

Source Contig U35_37259

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22848_PI390587928	Hv_44K_v2	TGTACTGACCAACCTTCAATCCTTGCTCTTGCTGAGCTACGAAGCTACCTTCATGAAAAG	431	GeneList: lightcyan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.128	1.176	1.796	1.620	0.596	0.256
Raw	32.636	51.348	71.287	103.841	13.289	5.101

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365397	2343	3e-21	1335 - 1394	97	58 / 60	plus	None
Harvest21	ABC33005	494	3e-25	432 - 491	100	60 / 60	plus
Harvest35	U35_37259	494	3e-25	432 - 491	100	60 / 60	plus

Contig Sequence (494 bp)

>U35_37259 494 Hv_44K_v2
GATTTGCCCTTCTAGAGATTCCTGACCTGAAGCGTGCCAGCTCCGTCTGCTCCTCCTGGC
GCTCCGCTTATACTAGCCTATGCAACCTTGGGTTGTACAAGCGGCCCCAGACGCCGTGCC
TCCTCTACACCTCTGAATCTGCTGGTGAGAGTGTNNCGTNCCTCTACAGCCTTGCAGAGA
AGAGGTCATACAAGTTGACTCTCCCGGATCCACCTATGCACACTAGGTATCTGATCGGCT
CCACAAATGGCTGGCTGGTTACTGCTGATGAGAGGTCTGANATGCATCTTCTAAATCCAA
TCACCTGTCAACAGATCGCTCTCCCGTCGGTGATCACCATCGAGCATGTGACTCCAATTT
TTGATGAAGCAGGTGCCTTATNTAAGTACCATTACTCGCGGCACACGGGATCTCCACGGC
TCACTAGGTTCTGTACTGACCAACCTTCAATCCTTGCTCTTGCTGAGCTACGAAGCTACC
TTCATGAAAAGGCA

Homology of Contig U35_37259 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g37300.1	493	1e-67	protein\|OsFBDUF53 - F-box and DUF domain containing protein, expressed
Brachypodium v1_2	Bradi2g38850.1	464	4e-68
Arabidopsis v10	None