barSeed - Barley Seed Development Database

Probe CUST_22847_PI390587928

Source Contig U35_49230

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22847_PI390587928	Hv_44K_v2	GAGACATGGCTGCTCTACTATCTCCTTGTAAGGCTTAGAACTAATTAATCATATGTTATT	34	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.777	4.444	1.201	0.665	0.245	0.188
Raw	152.722	229.237	54.450	50.140	4.479	4.305

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360734	2075	2e-24	1877 - 1936	100	60 / 60	plus	None
MLOC	MLOC_56605.3	1189	2e-24	1029 - 1088	100	60 / 60	plus	None
MLOC	MLOC_56605.2	1551	2e-24	1164 - 1223	100	60 / 60	plus	None
MLOC	MLOC_56605.1	2134	2e-24	2013 - 2072	100	60 / 60	plus	None
JLOC1	JLOC1_36628.5	1430	8e-25	1036 - 1095	100	60 / 60	plus
JLOC1	JLOC1_36628.4	1395	8e-25	1001 - 1060	100	60 / 60	plus
JLOC1	JLOC1_36628.3	1588	8e-25	1194 - 1253	100	60 / 60	plus
JLOC1	JLOC1_36628.2	1427	8e-25	1033 - 1092	100	60 / 60	plus
JLOC1	JLOC1_36628.1	2395	8e-25	2001 - 2060	100	60 / 60	plus
Harvest35	U35_49230	393	3e-25	35 - 94	100	60 / 60	minus

Contig Sequence (393 bp)

>U35_49230 393 Hv_44K_v2
TTTTTTTTTTTTTTTTTGTGATAATGTGGATATAAATAACATATGATTAATTAGTTCTAA
GCCTTACAAGGAGATAGTAGAGCAGCCATGTCTCATGGGAAGCCATGAGGGGAGAACAAC
GAAGAGGGTCCTCCTTGCCCTGATCTGCTCCCTCCGTCGTCGCCGCCGCCGCCGTCGCCG
TGGTTCATCACGTCCATCCCTAGGTTCAGGTACACCATCCTGTTGTCCAAGCTCAGGTTC
ATGCTCGTGCTCATCCCGCCGGTGCCGCTGTACACGCCACCGCCGCCAGCACCCGGATGG
TGGTCGCTGTACATGGGCACCATCGCATTGCCGGCCGCGTCCTCCCTGGACATGACCATG
GCCGCCGACTGCACGAGCTCGAGGCAGAGGCGG

Homology of Contig U35_49230 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None