barSeed - Barley Seed Development Database

Probe CUST_22844_PI390587928

Source Contig U35_49233

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22844_PI390587928	Hv_44K_v2	GATGTAATCATACAGAAAAGGTGGGCATTTTCATTTAAACGGAGAAGTAGGTCATTTTGA	16	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11126.2	1236	3e-22	847 - 905	98	58 / 59	plus	None
JLOC1	JLOC1_7332.1	1380	1e-22	890 - 948	98	58 / 59	plus
Harvest35	U35_49233	363	3e-25	17 - 76	100	60 / 60	minus

Contig Sequence (363 bp)

>U35_49233 363 Hv_44K_v2
TTTTTTTTTTTTTTTTTCAAAATGACCTACTTCTCCGTTTAAATGAAAATGCCCACCTTT
TCTGTATGATTACATCCGAGTCCCAACTAAATTTACACGACGACAATCTCATGCCAGGGC
ATCCAATTCTCCACCGCCAAATGCAGCCACAGACACAGATCCTGGAACACGTCCGACATG
TTCCCGCCAGTTCTGTTCAACTATCCCTTCAACACACAACGGCAAATGCGTTTTCAACCT
CTAACGCCAGAATTCCTGCTCATGGCCCCGCCACACATGGACTCTACCACAACGGCGAAA
TATCTTCAGGGGATCGACCAGACATCAATGCTTTCATGTAACTCCCCAACTACTTTATCT
GCA

Homology of Contig U35_49233 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None