barSeed - Barley Seed Development Database

Probe CUST_22833_PI390587928

Source Contig U35_25285

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22833_PI390587928	Hv_44K_v2	ATGGGGCCGTCCAGCAGCTCATATTACCCACCTAGTCTACATCTCATCCAGCGAGCTTCG	410	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251252.1	1514	2e-24	432 - 491	100	60 / 60	plus	ABC19099
MLOC	MLOC_13655.1	1032	2e-24	219 - 278	100	60 / 60	plus	ABC19099
JLOC1	JLOC1_9261.1	3043	8e-25	173 - 232	100	60 / 60	plus
Harvest21	ABC24396	582	3e-25	411 - 470	100	60 / 60	plus
Harvest35	U35_25285	584	3e-25	411 - 470	100	60 / 60	plus

Contig Sequence (584 bp)

>U35_25285 584 Hv_44K_v2
GAAATTCTAAACCTGAGGCAGAAGGAAGCAACGAGCGTCTGTGAGTCAGCGATGTCTGGC
CTTGGGAGCATCGGCGGGGGCGGCAACGGCAGAAGCCATGGTTCAGGGGGCAAGGCCAAG
CTGCTCGCGCTCGGCAAGGGTCTCCCTGAGCAAGTTCTACCCCAGGAGAAGCTCGTCGAG
ACCTACCTCCAGGACACCAGCTGCGACGATCCCGCCACCAGGGCCAAGCTCGAACGCCTC
TGCAAGACCACAACAGTGAGGACAAGGTACACTGTCATGTCCAAGGAGCTCCTGGATGAA
CACCCAGAACTAAAGACAGAGGGCACTCCAACATTGACACCACGTCTTGACATCTGCAAT
GCTGCGGTGCTTGAACTTGGTGCTGCTGCAGCTCGCGCCGCCCTTGGTGAATGGGGCCGT
CCAGCAGCTCATATTACCCACCTAGTCTACATCTCATCCAGCGAGCTTCGCCTCCCAGGG
GGGGATCTTTTCCTGGCAACCCGTCTTGGCCTCTCTCCAAACACAGTCCGCACATCCCTT
CTCTTCCTCGGCTGCTCAGGTGGTGCTGCCGCCCTCCGCACTGC

Homology of Contig U35_25285 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g34360.1	390	2e-81	protein\|stilbene synthase, putative, expressed
Brachypodium v1_2	Bradi3g29230.1	387	1e-80
Arabidopsis v10	None