- Probe CUST_22832_PI390587928
- Source Contig U35_25286
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22832_PI390587928 | Hv_44K_v2 | CCCTATGTTGATCATCGTGTCATCTACACACAAATCAAAGATATATTCACCGATTGAAAA | 335 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.202 | 1.796 | 0.818 | 0.999 | 0.823 | 0.929 |
| Raw | 10.042 | 21.528 | 9.555 | 16.970 | 4.109 | 5.839 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK360405 | 1880 | 7e-23 | 1711 - 1767 | 100 | 57 / 57 | minus | ABC52572 |
| MLOC | AK369600 | 1389 | 7e-23 | 1190 - 1246 | 100 | 57 / 57 | minus | ABC52572 |
| MLOC | MLOC_54335.4 | 2283 | 7e-23 | 1708 - 1764 | 100 | 57 / 57 | plus | ABC52572 |
| MLOC | MLOC_54335.3 | 2245 | 7e-23 | 1670 - 1726 | 100 | 57 / 57 | plus | ABC52572 |
| JLOC1 | JLOC1_34972.1 | 1986 | 4e-23 | 401 - 457 | 100 | 57 / 57 | minus | |
| Harvest21 | ABC52572 | 244 | 3e-25 | 172 - 231 | 100 | 60 / 60 | plus | ABC52572 |
| Harvest35 | U35_25286 | 408 | 3e-25 | 336 - 395 | 100 | 60 / 60 | plus |
Contig Sequence (408 bp)
>U35_25286 408 Hv_44K_v2 ACGCCGTGCTCAGCCTGCCCGCCGTCGAGAGGCTCTCCGGCGGCCTTTTTCAGGAGGTGA TCATCACCAACACCGTGCCGGTGCCGCCGGACCAGCGATTCCCGCAGCTCACCGTGCTTT CCGTCGCCAACCTCCTCGGCGAGACCATTTGGGGGGTCCACGACGAGTGCTCCGTCAGCA GCATCTTCCAATGATGATGATGATGATGATATATACACCCATCCATCAACATATCATCTT ACTACATTACAACATCTGTCACTTTTTGTTTTCCAGAGGCACCAAACATTCACCTGACAT TGCTAACTAGCTAACAATGCTGACATAAAGAAGATCCCTATGTTGATCATCGTGTCATCT ACACACAAATCAAAGATATATTCACCGATTGAAAAAAAAAAAAAAAAA
Homology of Contig U35_25286 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |