- Probe CUST_22819_PI390587928
- Source Contig U35_49245
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22819_PI390587928 | Hv_44K_v2 | CGCTGGTGGAACGTTTCCCATGCTTTTGCATTAACTCCTTTATTATTCATGCTTCCATTA | 24 | GeneList: red MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.253 | 1.957 | 1.617 | 0.825 | 0.220 | 0.235 |
| Raw | 593.633 | 1439.390 | 1018.668 | 832.103 | 77.430 | 89.915 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_60371.1 | 3530 | 2e-24 | 4 - 63 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_39356.2 | 3036 | 8e-25 | 2976 - 3035 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39356.1 | 3033 | 8e-25 | 2973 - 3032 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49245 | 459 | 3e-25 | 25 - 84 | 100 | 60 / 60 | minus |
Contig Sequence (459 bp)
>U35_49245 459 Hv_44K_v2 TTTTTTTTTTTTTTTTGTACTGAATAATGGAAGCATGAATAATAAAGGAGTTAATGCAAA AGCATGGGAAACGTTCCACCAGCGTACATAGAGTCCACATGTTCTACATGGAGCCATCTC TCCCAAATACTACATCGTAGTAACCCGACTCGCAAATAAGTAATTTGCAGCAGGCTATGT ACATTACCTGGTCAAATATCTCGACCACTACAAGCTACAGCCCTAGAGCTTCAGCCGATC TGCAATACGAGCTCGGCCACAAGCTCTTCCAGAACGTCGTTACGTATCATTTCAGCAATG TCTGCTCCAAACATTTCAAGTTCGGGGTGATGGTCCAGCGGCAAGGGTTCGACACTGTCC ACATCAAATGGCTGATAGTTCCTTCGCATGAGTAGTGACGTTTGCCAGACATTTTCAGCT AAGTTTCTCCAATCCATTTGAGGCCAGGAGTTCATCATG
Homology of Contig U35_49245 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |