- Probe CUST_22817_PI390587928
- Source Contig U35_49247
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22817_PI390587928 | Hv_44K_v2 | GACAATAAGTCCAATTGGTTGTCTCAGTGTGGTGAGTTGTGATCTCAACAGCTGGTGTGT | 125 | GeneList: royalblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.268 | 3.319 | 1.153 | 0.799 | 0.300 | 0.457 |
| Raw | 150.772 | 246.222 | 73.529 | 82.187 | 10.249 | 17.656 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_63204.5 | 3350 | 2e-24 | 3179 - 3238 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_63204.2 | 3537 | 2e-24 | 3379 - 3438 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_63204.1 | 3581 | 2e-24 | 3405 - 3464 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_41392.1 | 3558 | 8e-25 | 3381 - 3440 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49247 | 422 | 3e-25 | 126 - 185 | 100 | 60 / 60 | minus |
Contig Sequence (422 bp)
>U35_49247 422 Hv_44K_v2 TTTTTTTTTTTTTTTTATGAACAAATTTCCTTTCTTTTCCTTATATTATATATTATGAAC ATGACAGGAATTGCTAAAAACTCAACAAAGCCTGATAGGCCAATAAAAAAAAGGGTAATG GCCTCACACACCAGCTGTTGAGATCACAACTCACCACACTGAGACAACCAATTGGACTTA TTGTCACTCACTCCTGTACTTGAGAACAATCTCACAACCCCTCATGACAAACAACTGAAA GAAAGCCAAGAAAAAAGAATGCACAATCATTTTAGGAATCCCTACTTCGTACCAGAGTGT CTACCATTTGATGAAAGCCTTCTGCTATCGGTACCACTTAAAGGTTGCCTTCCAGATCTG TTTTGTCCATTTGAGGCTTTTCTCGACGCCAATGGTATTTGGGAATGACTTGGTGTCCTT GT
Homology of Contig U35_49247 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |