barSeed - Barley Seed Development Database

Probe CUST_22814_PI390587928

Source Contig U35_25291

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22814_PI390587928	Hv_44K_v2	GGTTGCATTACAAGGCTAGTTGCTCAGAAGGGTGTACATCTTATCAGGCATGCAATATAC	612	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.455	0.953	1.057	1.029	0.780	1.111
Raw	31.732	31.842	32.606	48.219	12.407	20.999

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355447	3298	2e-24	2307 - 2366	100	60 / 60	plus	ABC13137 ABC13138
MLOC	MLOC_64021.1	881	2e-24	221 - 280	100	60 / 60	plus	ABC13138
MLOC	MLOC_64021.2	1275	2e-24	221 - 280	100	60 / 60	plus	ABC13137 ABC13138
MLOC	MLOC_47859.1	1318	7e-23	200 - 259	98	59 / 60	plus	None
JLOC1	JLOC1_41996.1	1433	8e-25	340 - 399	100	60 / 60	plus
JLOC1	JLOC1_30802.1	1337	4e-23	219 - 278	98	59 / 60	plus
Harvest21	ABC23164	675	3e-25	613 - 672	100	60 / 60	plus
Harvest35	U35_25291	675	3e-25	613 - 672	100	60 / 60	plus

Contig Sequence (675 bp)

>U35_25291 675 Hv_44K_v2
CAAGGGCTCAATATTATGGAGAGCATGATGACTTTAAACGTTTTACGTACTTCAGCCGTG
CGGCACTAGAATTACTTTACCAATCTGGGAAGAAAGTTGATATAATCCACTGCCATGACT
GGCAAACTGCATTTGTTGCACCTCTTTATTGGGATGTATATGCAAATCTAGGCTTCAACT
CAGCTAGAATTTGCTTCACCTGTCATAATTTTGAATATCAAGGAACTGCTCCAGCTCGTG
ATTTAGCGTGGTGTGGCCTTGATGTTGAGCACCTAGACAGACCAGACAGGATGCGGGATA
ATTCACATGGAAGAATAAATGCTGTTAAGGGTGCAGTTGTGTATTCAAACATCGTGACAA
CTGTCTCGCCAACATATGCACTAGAGGTTCTCTCACAGGGCGGGCGTGGACTCCAAGATA
CACTTAAAGTACATTCCAGGAAATTTCTTGGGATACTTAATGGAATCGACACAGATACAT
GGAACCCTTCCACAGATAGGTATCTCAAGGTCCAGTATAATGCTAAGGACCTTCAGGGAA
AGGCAGCCAACAAAGCAGCCCTCAGAGAGCAGCTCAACCTGGCTTCTGCATATCCTTCAC
AANCCACTGGTTGGTTGCATTACAAGGCTAGTTGCTCAGAAGGGTGTACATCTTATCAGG
CATGCAATATACAAA

Homology of Contig U35_25291 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g45720.4	724	4e-123	protein\|starch synthase, putative, expressed
Brachypodium v1_2	Bradi2g18810.1	922	5e-136
Arabidopsis v10	AT4G18240.1	1040	7e-96	\| Symbols: ATSS4, SSIV, SS4 \| starch synthase 4 \| chr4:10082221-10087044 FORWARD LENGTH=1040