barSeed - Barley Seed Development Database

Probe CUST_22813_PI390587928

Source Contig U35_25292

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22813_PI390587928	Hv_44K_v2	CACCTAGAGCTTGGATGAAAATCATGAACTTGGACTTCGATTTTGTATGCAAATTATGAA	250	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61494.1	441	2e-24	254 - 313	100	60 / 60	plus	ABC24342
MLOC	MLOC_61495.1	2072	2e-24	279 - 338	100	60 / 60	plus	ABC12722 ABC12723 ABC24342
JLOC1	JLOC1_40187.1	2035	8e-25	1735 - 1794	100	60 / 60	minus
Harvest21	ABC24342	337	3e-25	29 - 88	100	60 / 60	minus	ABC24342
Harvest35	U35_25292	338	3e-25	251 - 310	100	60 / 60	plus

Contig Sequence (338 bp)

>U35_25292 338 Hv_44K_v2
CCGTGGTGTGCGGCGCACTCCGCGCGCTCCTCGGGGCCGTCGCCGTCGACAACGGCACCG
CCGACGCCGCCGCGGAGGTCTTCTGGCGCCTCAACGCCGCAACCCCCGCCGACATGTGAC
GCGGGTACGAGTAGATCGTTCAAGACGGTTTGCACTTGCACATCAGTGTTCACAAGTGCT
ACAGAGTACTACTACTATGTTTGAGGATAAGTGAAGCTGCAATCAAACTCGTATGTAAAT
TATGAACTGCCACCTAGAGCTTGGATGAAAATCATGAACTTGGACTTCGATTTTGTATGC
AAATTATGAAATTCCACTTCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_25292 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None