barSeed - Barley Seed Development Database

Probe CUST_22807_PI390587928

Source Contig U35_25299

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22807_PI390587928	Hv_44K_v2	AGTCGCTGCCATTTATGCATCGAGGCTGGAGGTTCTCTGGTGGAGTGATGCATTTGATCC	835	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.869	0.919	1.397	1.606	1221.220	0.755
Raw	51.186	80.566	111.000	202.173	47563.628	36.008

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74417.1	1883	2e-24	849 - 908	100	60 / 60	plus	None
JLOC1	JLOC1_49588.1	1894	8e-25	839 - 898	100	60 / 60	plus
Harvest21	ABC52027	561	3e-25	502 - 561	100	60 / 60	plus
Harvest35	U35_25299	895	3e-25	836 - 895	100	60 / 60	plus

Contig Sequence (895 bp)

>U35_25299 895 Hv_44K_v2
GGTTTCGCCTCCCCGAAATGCTTCTTCCTGTGGGTAACCACGGCGGCGACGGTGACGGCG
ACTGGGCCGTTCAGCTCGCCGCCGAGATCGAGGAACTCTCCTTGGGTTCCACCGGCGGTC
GAGTGGATCGTTTCAGCGCGCTCCCCGACGATATCCTCCATTCCATCCTCCTGCACCTCC
CTTCAACCCCCGCCGCCGCCCGGACCAGCGTCCTCTCCCGCCGCTGGCGCGGCATCTGGG
CCCAGCTCCCGGAGATTCGATTCCCCTTCCCCTCTAACCCGGCCTCCGTTGTCCCCGCGC
TCGCCGCCAGCGCCTCTGGTCCGGCCCTCCGCCTCTTCCACGTTGCGTGCCGCGACGACG
CCGGCGCTAACGCCTGGCTCCGCACCGTCGCGAGCCGCCTCATCGCAGGCGGAGAGCTTT
ACTTCTACAACAGGACGCCGGGGGAAGAGAAGGGGCAGGCGGAGGCGCTGTCCTGGCAGT
GCCGCACCTTCGAGCTGCCCTGCTTCGATACGGCTGCCAAGGTATGGCTGCGCCTAGGGT
TCGTCGACCTGGAGCTCCCACCGACCGGCGTGTTCGCCAGGCTCACTGAGCTGCGCTTAG
AACACGTGAATTTGGAGTGTGGTTTCCAGCTCGGGGACATGGTCTCGTCGCCACGGTGCC
CAGCGCTGCGGGAGCTCTGCATCGCCAGGGCCCGGGGAGTGGTCAGCCTCTGCATCATCT
CGCAGACACTTGAGCGTCTTGAATTGGATATTCTGCATGGACTTGGGGAGCTCACTGTTG
TTGCGCCAATGCTCAGAGCGTTGAATGTGCATGCTTGCTTTGCTTGGAGGAAGCCAGTCG
CTGCCATTTATGCATCGAGGCTGGAGGTTCTCTGGTGGAGTGATGCATTTGATCC

Homology of Contig U35_25299 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g02290.1	463	2e-57	protein\|OsFBX208 - F-box domain containing protein, expressed
Brachypodium v1_2	Bradi1g59060.1	438	2e-74
Arabidopsis v10	None