- Probe CUST_22795_PI390587928
- Source Contig U35_49255
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22795_PI390587928 | Hv_44K_v2 | TCTTGAATGTACTATTTATGTATTGATTGGACCGGGTTTTTGGCTCTTCGGACCAAAAAA | 11 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.813 | 1.678 | 1.160 | 0.826 | 0.334 | 0.334 |
| Raw | 325.716 | 480.407 | 286.734 | 308.353 | 45.716 | 49.837 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_58514.3 | 3252 | 3e-21 | 85 - 138 | 100 | 54 / 54 | minus | None |
| MLOC | MLOC_58514.1 | 3490 | 3e-21 | 91 - 144 | 100 | 54 / 54 | minus | None |
| MLOC | MLOC_58514.2 | 3489 | 3e-21 | 91 - 144 | 100 | 54 / 54 | minus | None |
| JLOC1 | JLOC1_38028.2 | 3429 | 2e-21 | 3355 - 3408 | 100 | 54 / 54 | plus | |
| JLOC1 | JLOC1_38028.1 | 3535 | 2e-21 | 3461 - 3514 | 100 | 54 / 54 | plus | |
| Harvest35 | U35_49255 | 327 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (327 bp)
>U35_49255 327 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGTCCGAAGAGCCAAAAACCCGGTCCAATCAATACATAAATAG TACATTCAAGATCATTACTATACCCAACAACAAACTATAGGAATCCACAAACCACAATAC AACATATTGTACAATTCCTTAATTCATCTTGATTGGGAATTGACAGAAGGTAGCACCTGT ACTAATGCTCAAATGACAACAGTATCCAGGAAAGAACAAAAAGGGGCATGTGCTAGGTTT GCACACCACACACGGTGGTATCTGAAAGACTGAAACTGAAGCTATTAGCCCCTGCTGCCA GCTACCTACCCTCAGACCATACATGCT
Homology of Contig U35_49255 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |