barSeed - Barley Seed Development Database

Probe CUST_22794_PI390587928

Source Contig U35_49256

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22794_PI390587928	Hv_44K_v2	AGCCCGTCAGACTCATTGGGAACAAAGAGGAGTAAAATGTCCCCTATTTTGATTAAAAAA	11	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.929	1.396	1.037	0.873	0.392	0.526
Raw	528.877	600.165	397.249	530.219	81.007	120.086

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_49256	292	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (292 bp)

>U35_49256 292 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATCAAAATAGGGGACATTTTACTCCTCTTTGTTCCCAATGAG
TCTGACGGGCTACACAGAAAAAGAACTACAGGGGATTCCTATGGTCACCAGTAGTCCCCG
CAAGAGCAGGAACCGCCTTTGAAGTGGTGAAATCGAACGGCGTCTCGAATCACAAACTCC
CGACCGGTCACCGTCGATATCAACTTGATCACCGTGTGGCAGTCGCCGCAAATGCGAAGG
TTCTTCATGATGTGGATGGGCATCCAAGCAGGCAGGTTCATGATCCCAAAGG

Homology of Contig U35_49256 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None