barSeed - Barley Seed Development Database

Probe CUST_22793_PI390587928

Source Contig U35_49257

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22793_PI390587928	Hv_44K_v2	TGTGCGATAGGAATATACTATGTCAAGGGAGGGGAAATTTGTAGAAATAACACAATGATG	77	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.411	0.927	1.727	1.545	1.119	0.784
Raw	4.168	19.781	31.946	38.310	11.795	8.777

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7435.1	2402	7e-23	2286 - 2345	98	59 / 60	plus	None
JLOC1	JLOC1_4900.1	954	4e-23	736 - 795	98	59 / 60	plus
Harvest35	U35_49257	336	3e-25	78 - 137	100	60 / 60	minus

Contig Sequence (336 bp)

>U35_49257 336 Hv_44K_v2
TTTTTTTTTTTTTTTAGTAACTATAACTCTTCTTGTCTTTAATTATGTGGTTTGTATGCT
TATATGAATACAATCATCATCATTGTGTTATTTCTACAAATTTCCCCTCCCTTGACATAG
TATATTCCTATCGCACACTCGTACGTTCATTATTGCGGCAACGACAAAATAAAATTGGAC
TGCTCGTCAATCTCAAAGCATCCTGTCCGAGAGGCTGGGCAGCCGGCGGAAGAAGTTGAC
GGCCGCGGCGGGCATGGGGTCCCGGAACATGGGATGGCGGAGGTAGTAGAACCCGCTGGC
CACCGCCACCATCTTGGGCGGCATCGCATACAGCGC

Homology of Contig U35_49257 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None