barSeed - Barley Seed Development Database

Probe CUST_22792_PI390587928

Source Contig U35_49258

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22792_PI390587928	Hv_44K_v2	AGAGGCATCACCTGCAGAGTGTTTATATTTTCTCACATCTTCATTTGTTATGCTGATTTC	53	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.341	1.942	1.255	0.791	0.512	0.456
Raw	31.848	44.467	23.226	23.982	4.154	3.739

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_49258	425	3e-25	54 - 113	100	60 / 60	minus

Contig Sequence (425 bp)

>U35_49258 425 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAGGAAAATAATAGATTTTGATTATACTTTTCTAATGAAATCA
GCATAACAAATGAAGATGTGAGAAAATATAAACACTCTGCAGGTGATGCCTCTTAAGAGA
ACTGTGAAATATTAGTAAAGAAATAGTAATCGCGAGGAGAAACTATTAAACTCTTCAGCG
GCTAATCAGTAACAAAGAATGGTACATCAGTACATTCTGTGTACAAAAACCAATTGGAAT
GCACTTTCAGTTTATGCTTCAGCCTAAGAAGTCATCACCAATAGTCACCACAAGAGCACA
CGCCATTCTTAAAATGATGGAAGCGACTGGAGTCCCGCACAATGATCTCATGATCAACAA
TCTTTGAGATGTACGTGAAAGCACTGTGGCAATCACCACAAACGCGCAGGTTCTTTGTGA
TCCTT

Homology of Contig U35_49258 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None