barSeed - Barley Seed Development Database

Probe CUST_22785_PI390587928

Source Contig U35_37288

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22785_PI390587928	Hv_44K_v2	AGAAAATTCTGGAGCATCTTGTGATCAAAGTGGTGCCAATGGAAAATTTTCATGGCCGCA	390	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.588	1.534	1.070	0.971	0.623	0.485
Raw	59.384	84.258	54.481	72.358	17.093	14.961

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60395.4	1779	2e-24	553 - 612	100	60 / 60	plus	None
MLOC	MLOC_60395.5	1560	2e-24	562 - 621	100	60 / 60	plus	None
MLOC	MLOC_60395.1	1788	2e-24	787 - 846	100	60 / 60	plus	None
MLOC	MLOC_60395.2	1911	2e-24	577 - 636	100	60 / 60	plus	None
MLOC	MLOC_60395.3	1820	2e-24	577 - 636	100	60 / 60	plus	None
JLOC1	JLOC1_39380.2	1880	8e-25	560 - 619	100	60 / 60	plus
JLOC1	JLOC1_39380.1	1899	8e-25	579 - 638	100	60 / 60	plus
Harvest21	ABC33054	482	3e-25	391 - 450	100	60 / 60	plus
Harvest35	U35_37288	482	3e-25	391 - 450	100	60 / 60	plus

Contig Sequence (482 bp)

>U35_37288 482 Hv_44K_v2
GCTCGCCCTCGCCGTCCTCGGTTCCCCCGCCTCCGCAGCCAGGAAGATCCCGGCCTCCGT
CACCCCGATCTCGCGGGACCTCTACCGCCCCAGTGACACCCTTCTGAGTGAGATCAAGGC
CCTGGTTGCCCGGAATCCGGATAGCTTGACTATGGATACAGTAAGAGCAAGTAACAAAGG
GTATTCCGCAGAGATGTTCGTTGTTACTTTTAATCATGTGAAGAAAACCATAGCCGATGG
CTCCAAGATCAAAATCCTTCTGAAGGTTCATTGTCTTCCAGAGCTTTGGGCAGCATGGCA
GAGAACTTATTACCTCTGAACTTGCATTAAGTCTGCTCTACATTTTGACGGAGAAGCGCA
AAATTGCCGGTGTGGACCTATCATCATTTGAGAAAATTCTGGAGCATCTTGTGATCAAAG
TGGTGCCAATGGAAAATTTTCATGGCCGCAAGCGCGTTGAAGCAGGGGAGCTTTGTGATA
GG

Homology of Contig U35_37288 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g02710.1	436	1e-54	protein\|zinc carboxypeptidase family protein, putative, expressed
Brachypodium v1_2	Bradi3g01750.1	431	4e-59
Arabidopsis v10	None