barSeed - Barley Seed Development Database

Probe CUST_22783_PI390587928

Source Contig U35_49260

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22783_PI390587928	Hv_44K_v2	GATTGATTGCCTTTTTGTATAGAACATCAGCAGCTTATATATATCTATCTGAGTTTGGGC	17	GeneList: thistle1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.763	3.500	1.121	0.731	0.305	0.379
Raw	2679.440	2041.492	613.002	598.904	95.319	125.481

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373991	3081	2e-24	3019 - 3078	100	60 / 60	plus	None
MLOC	MLOC_11792.1	3477	7e-23	3390 - 3449	98	59 / 60	plus	None
JLOC1	JLOC1_7855.1	1884	4e-23	1797 - 1856	98	59 / 60	plus
Harvest35	U35_49260	373	3e-25	18 - 77	100	60 / 60	minus

Contig Sequence (373 bp)

>U35_49260 373 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCCCAAACTCAGATAGATATATATAAGCTGCTGATGTTCTATA
CAAAAAGGCAATCAATCCACCCTCACACGGTCCCAGGGTTTAGCAAGCAAAAGCTTGTAC
TTCCAACAACCATATATATTCAGTCTAGCGTCATACGCTGCATAACTAGGGGGCTATTAT
GCTATCTAGAGTCTCTCCAGCACCAGCTCTGCATAACTAGGGGGCTATTATGCGATCTAG
AGTCTCTCCAGCACCGGCCGCAAAAGCCGTTTGCTCATCCACCACGGTTATGGTTCAAAG
CGAGGGCGGTGGTGAGACGGTTCATTTCCACAGCTTCACGTGCTTGTCATGGCTCGCTGA
GGCCACCAGGCCG

Homology of Contig U35_49260 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None