- Probe CUST_22782_PI390587928
- Source Contig U35_49261
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22782_PI390587928 | Hv_44K_v2 | GTTCAAGTCAGCAAATTTGTCTATGTGACAATGAGTTAACGAGGAAAGAGGTAAATTGAG | 18 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.138 | 1.907 | 1.384 | 0.764 | 0.425 | 0.324 |
| Raw | 41.551 | 60.139 | 37.209 | 34.564 | 4.872 | 3.607 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_49261 | 340 | 3e-25 | 19 - 78 | 100 | 60 / 60 | minus |
Contig Sequence (340 bp)
>U35_49261 340 Hv_44K_v2 TTTTTTTTTTTTTTTTTACTCAATTTACCTCTTTCCTCGTTAACTCATTGTCACATAGAC AAATTTGCTGACTTGAACCCTATGTTACTCTTGATACAGCTCTACTCTTGAAGTTACCCC CACTATGGTCAGTCTCAAATATAACAGCACTATGCAATGTATAAAGACGCTTTTTGTGTT CAAATTGAACTACAAAAATGTCTTATAGTTAGAAACAGAGGGCAGTGATTTTTTAGGCCA GTTCTATTAGCGGGATTCATATGACTCATTCAGCATAAACGTCCAAGAATTCGTTGCCTA GACCCTCCAAAGAAATTATAGGCTCCATTCTTCCCCAAAA
Homology of Contig U35_49261 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |