barSeed - Barley Seed Development Database

Probe CUST_22779_PI390587928

Source Contig U35_49266

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22779_PI390587928	Hv_44K_v2	GGTTCGATGGTTCGGTTTTCTTGTTCATCTTTGATTGAAGTTTGTGTGAAGATGCTCAAA	23	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.357	1.729	1.496	0.782	0.294	0.262
Raw	305.842	595.079	450.040	377.969	48.914	47.669

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_39231.3	2987	1e-23	2891 - 2948	100	58 / 58	plus
JLOC1	JLOC1_39231.2	2982	1e-23	2886 - 2943	100	58 / 58	plus
Harvest35	U35_49266	429	3e-25	24 - 83	100	60 / 60	minus

Contig Sequence (429 bp)

>U35_49266 429 Hv_44K_v2
TTTTTTTTTTTTTTTTGGGTTTTTTTGAGCATCTTCACACAAACTTCAATCAAAGATGAA
CAAGAAAACCGAACCATCGAACCATCGCATCCTTACGAGCACATCACTCCGCATGAAAAC
TCTTTTGGTAACTTCAGTCTACACGGAAGATCTTAACATGGCTCAGTCACAAGCAGAGTG
CACGGAGAGAGCATCACATCCAAAGCCAAAATGGCGGGGGGTTTTCCTTATACAGATCAC
AAACGGTACGCTTCTACAAGAATGCTACAACAACAACATAGCTTATGCCTGATAGGTCTG
AGGTGTGCTTCTAAAAGAATGTGGTATACAGGTCGATCACTGAGGCGAGAGGTTTTACCT
CATCGACTCAGCTGCTCGGCCGGGGCATTGCGTTCGGCGGTCTTACTGCAGGGGCGCCAT
ATCCAGGCG

Homology of Contig U35_49266 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None