- Probe CUST_22778_PI390587928
- Source Contig U35_49267
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_22778_PI390587928 | Hv_44K_v2 | ACCTTACTGTTCCACAGTAGCTGGAAAGCCCCAAATGAATGAAGATTTTACTCATCTAAA | 14 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.142 | 0.296 | 0.783 | 1.836 | 1.260 | 1.540 |
| Raw | 7.474 | 26.107 | 60.943 | 216.840 | 53.321 | 71.100 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_2936.1 | 3306 | 2e-21 | 3182 - 3238 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC16065 | 1129 | 6e-22 | 1057 - 1116 | 97 | 58 / 60 | plus | ABC16065 |
| Harvest35 | U35_49267 | 332 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_20236 | 1131 | 6e-22 | 1059 - 1118 | 97 | 58 / 60 | plus |
Contig Sequence (332 bp)
>U35_49267 332 Hv_44K_v2 TTTTTTTTTTTTTTTTTAGATGAGTAAAATCTTCATTCATTTGGGGCTTTCCAGCTACTG TGGAACAGTAAGGTACAGAAAGGCAAACTTTTTGCCACTGAAGGCAGGCATGGATGGAAC TATACCAGCTGTCTTTCTTTACTTCTTATACACACACATCTACAGAGGCCGGGGCGTCGC CTCCTTTTCTAAAAAAAACACACACATCTACAATCTGCAAGACTGGTAAATCTGCTAACC AATATATACCGAAAGACTCGAGGATGAAAAAGATCATCTCACCAAGCATTTCATCCGGGC AATACAACTGCTACTTTTACTATCTATATATG
Homology of Contig U35_49267 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |