barSeed - Barley Seed Development Database

Probe CUST_22773_PI390587928

Source Contig U35_37295

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22773_PI390587928	Hv_44K_v2	TCTAGTGATGATAAAATCAGTCGTTCGTGAATAAGCATGCATGTTGCGTCCATAGGCGTA	443	GeneList: black MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.010	0.010	0.393	1.713	2.836	3.798
Raw	62.516	263.190	21865.267	132951.566	82927.200	123349.233

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65022.1	902	7e-23	637 - 696	98	59 / 60	plus	ABC00257 ABC00821 ABC32619
JLOC1	JLOC1_42752.1	993	4e-23	728 - 787	98	59 / 60	plus
Harvest21	ABC33068	535	3e-25	444 - 503	100	60 / 60	plus
Harvest21	ABC00257	795	3e-25	592 - 651	100	60 / 60	plus	ABC00257
Harvest21	ABC00821	2122	1e-23	1233 - 1292	98	59 / 60	plus	ABC00821
Harvest35	U35_37295	535	3e-25	444 - 503	100	60 / 60	plus
Harvest35	U35_14078	2121	3e-25	1233 - 1292	100	60 / 60	plus

Contig Sequence (535 bp)

>U35_37295 535 Hv_44K_v2
TTTTTTTTTTTTTTTTTAACCAAGGTGCGAAGCAGGTTCAAACATACCACAGGCTCTTAC
AACACGGTTGTAAACCAACAACCACAAAGCAAAGCAAGCATTCAAACAGATAAAGCCACT
CGGGCAGATCACAGGGTGGCAGCAGCACCCCAGGAGGCAGGCTTCTAGTACTCGTCGCCC
TCATCACCGTCCTCGCCCTCGTCGAACTCGGCGCCAACTTCCTCGTAGCGAGGCGCTGCG
CTACTTCATGGCGTTGCCGGTACCGTCTCAGCCCGTGGACCCGAGCACCGGCAATGTTGG
TCAGAGCGGCCTCATGGACCTGCCCGGATGCCCCAGGGAGATGCAACGGGACTTCGTCAG
ATTACTCGTCGCCCCGGGGCAGTGCAACTTGGCGACCATTCACAACGTTCGATACTGCCC
CGCCGTGGAACAGCCGCTGTGGATCTAGTGATGATAAAATCAGTCGTTCGTGAATAAGCA
TGCATGTTGCGTCCATAGGCGTANGCTTGTGCGTGTGGTGTGCATGTATGCATAT

Homology of Contig U35_37295 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None