barSeed - Barley Seed Development Database

Probe CUST_22772_PI390587928

Source Contig U35_37296

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22772_PI390587928	Hv_44K_v2	TAAAAGATGTGCTGCCAGAAGTTTGGGTGTGCAAAAGTCGTCAAAAAAGCCCAAGTTGGG	323	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.575	0.650	0.964	1.574	1.124	1.937
Raw	682.261	1172.403	1555.457	3907.813	1006.344	1894.793

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371696	800	2e-24	362 - 421	100	60 / 60	plus	ABC49845
MLOC	MLOC_63956.2	714	3e-22	658 - 713	100	56 / 56	minus	ABC49845
MLOC	MLOC_63956.1	444	3e-22	386 - 441	100	56 / 56	minus	ABC49845
JLOC1	JLOC1_41945.2	643	1e-22	8 - 63	100	56 / 56	plus
JLOC1	JLOC1_41945.1	1314	6e-21	1 - 53	100	53 / 53	plus
Harvest21	ABC33070	464	3e-25	324 - 383	100	60 / 60	plus
Harvest21	ABC16900	886	3e-25	328 - 387	100	60 / 60	plus
Harvest35	U35_37296	464	3e-25	324 - 383	100	60 / 60	plus
Harvest35	U35_23075	886	3e-25	328 - 387	100	60 / 60	plus

Contig Sequence (464 bp)

>U35_37296 464 Hv_44K_v2
GGAAAAAGGAGAGACAACTCCATGGCAGCCGAGGGTTCCAGCGGCGGCGGCCGGAAAACA
ACGTTGCCTCATAACCCAAGAGAGCGCGGAGCGGCGAAATTCCTCACCGGCTTGCCATCG
CGAGGAAACTTCTCCTCAAGTTCCCTATCTTCCAATCTGGGAGGCCTCAGGGTTTATGTC
TGCGAGCACGACACAAATCCTCCAGAGGGACAAGTGATCGAGACGGATACGACAAATATC
TTAATCAGACATCTGCAACTAAAGAAGAAAGAGAGTGAGGCCAAAGACGCAGGTTCTAGG
ACTCAAGGGGAAAGTGGCAAGGCTAAAAGATGTGCTGCCAGAAGTTTGGGTGTGCAAAAG
TCGTCAAAAAAGCCCAAGTTGGGCAGTTCTTCCGGACTGCCTTCCTCTGGACGAACTGAT
CACTCGCTTGAGAGAGGCGCAGAGTTGATATCAATCTCAAGTTT

Homology of Contig U35_37296 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None