barSeed - Barley Seed Development Database

Probe CUST_2276_PI390587928

Source Contig U35_2945

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2276_PI390587928	Hv_44K_v2	TTCAGCTTCACCCTTCCAAGGGAAGAATAAAAAGCATGCTGCATGTTCAAGCTGAAAAAA	1232	GeneList: plum1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.013	0.031	0.569	1.922	1.793	2.501
Raw	15.465	75.647	1158.594	5777.013	1982.843	3010.913

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_32742.1	1465	5e-22	1372 - 1426	100	55 / 55	plus
Harvest21	ABC06609	391	3e-25	321 - 380	100	60 / 60	plus	ABC06609
Harvest35	U35_2945	1303	3e-25	1233 - 1292	100	60 / 60	plus

Contig Sequence (1303 bp)

>U35_2945 1303 Hv_44K_v2
CCGTCTTCCAGCTCTTCTTGCTGAGGTGAACACACACACTCTCTCAAGGATAGATACACC
TTGCGATGAGAATGGCGAGAGCCCTGCTCGTCGTTGTCCTCGCCGCGTGCTTTGTGGCGC
TCGGCCTGCCCGGCGGCGCGGCGGCGGAGAGGAAGATCGTCGGCATCTACGAGCTCAAGA
AGGGAGATTTCTCGATCAAGGTTACCAACTGGGGTGCCACTCTCATGTCCGTAATCCTCC
CCGACTCGAGAGGAAACTTGGGGGATGTGATCCTGGGCTACGACACGGTTGCTGAATATG
TGAATGGCACCGCCTACTTCGGAGGGCTGATCGGCCGTGTCGCCAACAGGATCGCCAACG
CCCGGTTCACGCTGGACGGGAAATCCTACCGCTTGTTTCCCAACGATGGCAACAACACGC
TACACGGTGGTCACCGGGGATTCGACAAGGTCGTGTGGACGGTGAAGGAGCACGTCGCCG
GTGGCCGCTCCCCGTTCATCACCCTGTATTACCATAGCTTCGACGGAGAGCAAGGGTTTC
CAGGCGACGTGGACGTGCACGTGACGTACCAGATCACGGGCCGGCACGCGCTGAGCGTGC
GCATGAACGCGACGGCCCGGAGCAAGGCCACGCCGGTGAACCTCGCGCACCACGCCTACT
GGAACCTCGGCGGCGACGGCAGCGGCAGCGTCCTCGGCCAGAAGATCCGCCTCTTCGCCT
CTCGGTACACGCCCGTGGACGCCGCGCTCATCCCGACGGGCCGCCTGGCGCCCGTGGCCG
GCACGCCGTACGACTTCCGCAGGCCGGCGGCCGTGGGCGCGCGCATCGGCGGCCTCCTGA
GCCGTGGCGTCGCCGGGTACGACATCAACTACGTCGTCGACGGCGGCAGGGGCCTGCGGC
GGGTGGCGGCCGTCCGGGACGGCGCGTCCGGCAGGGCGATGGAGCTGTGGGCGGACCAGC
CCGGGGTGCAGTTCTACACGGCCAACGGGCTGAGCGGGGTGAGGGGGAAAGGCGGCAAGG
TATACGGCCGCTACGGCGCGCTGTGCCTGGAGACGCAGGGGTTCCCGAACGCCGTCAATG
AACCGAGCTTCCCGTCGCAGATCGTCCGGCCGGGGAAGGTGTACAGGCATCACATGCTCT
TCAGGTTCTCCTTCTAGTAGTCCAAGCTCGGTCGTTTGTCAGGCAACACAACCGTCGTCT
CTTGTGTTTCTGTACTGTCAGGATTTGATCGGTTCAGCTTCACCCTTCCAAGGGAAGAAT
AAAAAGCATGCTGCATGTTCAAGCTGAAAAAAAAAAAAAAAAA

Homology of Contig U35_2945 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g36600.1	379	9e-172	protein\|aldose 1-epimerase, putative, expressed
Brachypodium v1_2	Bradi3g46780.1	379	0.0
Arabidopsis v10	AT3G47800.1	358	8e-105	Galactose mutarotase-like superfamily protein \| chr3:17634971-17636998 FORWARD LENGTH=358