barSeed - Barley Seed Development Database

Probe CUST_22761_PI390587928

Source Contig U35_15124

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22761_PI390587928	Hv_44K_v2	GGAAGAAATTTGTGGCTTGAATTCAAGCCGAAGGTCTAGGGTTTGGCTGAGTAGAGAAGA	92	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.399	0.446	0.934	1.119	1.211	2.287
Raw	102.978	179.178	321.654	551.019	233.157	486.854

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC02543	533	3e-25	93 - 152	100	60 / 60	plus
Harvest35	U35_15124	533	3e-25	93 - 152	100	60 / 60	plus

Contig Sequence (533 bp)

>U35_15124 533 Hv_44K_v2
AAGGATTTGCTTCACAGTAATAGCAGGTCTCCAGCCACTGTCCTCATTGAGGATTGAAAG
GCAGACTGTTCCTGAGGGATAGACATTCGGGTGGAAGAAATTTGTGGCTTGAATTCAAGC
CGAAGGTCTAGGGTTTGGCTGAGTAGAGAAGAGAGGCTTCCCCTTCGTCCAGTCGGGAGC
CACCATGAGCCGATCGGGGCAGCCGCCGGATCTGAAGAAGTACATGGACAAGAAGCTCCA
AATCAAGCTGAATGCGAACCGCGTTGTCATTGGCACGCTTCGTGGATTTGATCAGTTCAT
GAATTTGGTGGTGGACAACACTGTGGAGGTCAATGGAGATGAGAAAACCGACATAGGGAT
GGTGGTTCTGAGAGGAAATAGTGTTGTGATGATAGAAGCCCTTGAACCAATTGCCAGGTC
TCAGTGATATTTTGACTTACCTGCTTCTGGTTCAGTACTTGAGCTAATAGTGTTTGGTCA
AAACCAATCTGTACGCAATCGGGCAAATTGTATCCTAATATTTGTAATGTGCG

Homology of Contig U35_15124 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None