barSeed - Barley Seed Development Database

Probe CUST_22760_PI390587928

Source Contig U35_15125

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_22760_PI390587928	Hv_44K_v2	CTCTTCACACGTGTGTATTTTACCATTGTTCAAATTGTTGAGAACGATTTCATGATGCAA	971	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.616	4.761	1.373	0.625	0.265	0.272
Raw	129.494	226.361	52.144	42.480	3.959	5.426

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66074.3	926	2e-23	869 - 926	100	58 / 58	plus	ABC02083
MLOC	MLOC_66074.4	1006	3e-21	953 - 1006	100	54 / 54	plus	ABC02083
Harvest21	ABC02083	1073	1e-24	84 - 142	100	59 / 59	minus	ABC02083
Harvest21	ABC02079	1144	1e-24	972 - 1030	100	59 / 59	plus
Harvest35	U35_15125	1142	3e-25	972 - 1031	100	60 / 60	plus

Contig Sequence (1142 bp)

>U35_15125 1142 Hv_44K_v2
CAAACTAATCATCGCCCACCACCCTCCAACGATCACCAACCAAAACCCCTCCACACGCCC
GCCCGCGCGCGCCACGGACGCAGCAATGGCCGCCCTCGCCGCCTCCATCGCCACCTCCAC
GGCGTTCGCCGCGAAGCCGCGCCTGTCCCGCCCGCCGGCGCGCCTCTCCGTCTCCTGCTC
CGCGTCCAGCGGCGACAACAACAACAGCACCGCCACCCCCTCGCTCTCCGCCTCCATCAA
GACCTTCTCGGCCGCGCTGGCGCTCTCCTCCGTGCTCCTCTCCTCGGCCGCCACCTCCCC
GCCCCCCGCGGCCGCCGACATCGCCGGCCTGACCCCGTGCAAGGAGTCCAAGGCCTTCGC
CAAGCGGGAGAAGCAGTCGGTCAAGAAGCTCAACTCGTCGCTCAAGAAGTACGCGCCCGA
CTCCGCCCCGGCGCTCGCCATCCAGGCCACCATCGACAAGACCAAGCGCCGGTTCGAGAA
CTACGGCAAGTTCGGCCTGCTCTGCGGCTCCGACGGCCTGCCCCACCTCATCGTCAGCGG
CGACCAGCGGCACTGGGGCGAGTTCATCACCCCCGGCGTGCTCTTCCTCTACATCGCCGG
CTGGATCGGCTGGGTCGGACGCAGCTACCTCATCGCCGTCAGCGGCGAGAAGAAGCCCGC
CATGAGGGAGATCATCATCGACGTCGAGCTCGCCGCCAGGATCATCCCCAGGGGCTTCAT
CTGGCCCGTCGCCGCATACCGCGAGCTCATCAACGGCGACCTCGTCGTCGACGACGCCGA
CATCGGCTACTAACTAGCTGCCATGCGTGCGTGGTTGGCTAGTCGGTCCCAAGTCAGATG
GGCAGCGGAGGATGAGGGCTTGTGGTGTCGATCTGTGTGGGCTTGGTGTAGGAGCTGATA
GGATCATGGAGAAATGGAACCTCTCTTGTATTTAAGAAACTGAACCCAATCTTGTATAAC
TATTGTGTTCTCTCTTCACACGTGTGTATTTTACCATTGTTCAAATTGTTGAGAACGATT
TCATGATGCAAAAAAAAAAAAAAAATGCAACTGCATCAACATACATAGGAAACTCAACTC
AGAAAAAAGGTTGATTTTTGTTATAAGAATACAAGCCAAATATCTAAAAAAAAAAAAAAA
AA

Homology of Contig U35_15125 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g56670.1	237	2e-111	protein\|photosystem I reaction center subunit III, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g06890.1	236	1e-115
Arabidopsis v10	AT1G31330.1	221	1e-89	\| Symbols: PSAF \| photosystem I subunit F \| chr1:11215011-11215939 REVERSE LENGTH=221